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IMGVR_UViG_3300009690_001437-3300009690-Ga0116143_100113731
Arc-VirIMGVR_UViG_3300009690_001437-3300009690-Ga0116143_100113731
Identity
- Kingdom:
- archaea
Quality
76.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-60
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF24746.2 best | DUF7694 | 72.9 | 2.20e-20 | 96.5% | 83.3% |
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7oocE01 | 3.30.70.60 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B | 0.60 | 50.0 | 4.43e-01 | 94.7% | 67.1% |
| 3im9A02 | 3.30.70.250 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding | 0.55 | 38.0 | 3.59e-01 | 93.0% | 56.8% |
| 5xamA02 | 3.30.70.3220 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 43.0 | 3.19e-01 | 94.7% | 31.1% |
| 1r6yA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 43.0 | 3.72e-01 | 93.0% | 59.2% |
| 2qndA02 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.54 | 44.0 | 3.98e-01 | 93.0% | 70.0% |
| 4dzdA01 | 3.30.70.1200 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Crispr-associated protein; domain 1 | 0.53 | 44.0 | 4.16e-01 | 96.5% | 90.0% |
| 6secA03 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.52 | 43.0 | 2.84e-01 | 100.0% | 40.1% |
| 3qa8A01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.51 | 40.0 | 3.66e-01 | 93.0% | 68.7% |
| 1ne2B00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.51 | 35.0 | 2.56e-01 | 71.9% | 89.1% |
| 2vfrA04 | 3.30.70.2520 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 40.0 | 3.60e-01 | 96.5% | 61.7% |
| 2o3bB00 | 3.40.1460.10 | Alpha Beta › 3-Layer(aba) Sandwich › Nuia › Nuclease A inhibitor-like | 0.51 | 39.0 | 3.16e-01 | 93.0% | 59.3% |
ECOD (19)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4971261 | 312.1.1.2 ↗ | a+b three layers › HIT-like › HIT-related › HIT-related › HIT | 0.68 | 58.0 | 4.37e-01 | 100.0% | 48.7% |
| 3181158 | 7581.1.1.22 ↗ | a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › Thiolase_N, ketoacyl-synt | 0.57 | 47.0 | 3.07e-01 | 96.5% | 93.7% |
| 3415955 | 304.126.1.2 ↗ | a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C › V-ATPase_C | 0.56 | 44.0 | 3.60e-01 | 94.7% | 44.3% |
| 5175 | 304.4.1.4 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › ABM | 0.56 | 44.0 | 3.78e-01 | 93.0% | 59.2% |
| 3477312 | 304.9.1.81 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RBD_AKAP-17A | 0.56 | 46.0 | 3.15e-01 | 100.0% | 48.8% |
| 3497701 | 304.9.1.81 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RBD_AKAP-17A | 0.55 | 46.0 | 3.52e-01 | 100.0% | 77.7% |
| 3784198 | 304.114.1.0 ↗ | a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain | 0.55 | 43.0 | 3.71e-01 | 94.7% | 69.5% |
| 3619169 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.54 | 42.0 | 4.25e-01 | 96.5% | 94.5% |
| 3488222 | 304.120.1.9 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI › MBTP1_N | 0.53 | 43.0 | 3.76e-01 | 94.7% | 57.9% |
| 3471914 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.53 | 39.0 | 2.65e-01 | 84.2% | 63.5% |
| 3687943 | 304.112.1.3 ↗ | a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain › ArgoN | 0.53 | 39.0 | 3.45e-01 | 94.7% | 51.6% |
| 3730042 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.52 | 41.0 | 3.44e-01 | 94.7% | 49.6% |
| 4003271 | 387.1.1.0 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related | 0.52 | 35.0 | 3.79e-01 | 93.0% | 91.1% |
| 3208662 | 305.1.1.1 ↗ | a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L | 0.52 | 41.0 | 2.87e-01 | 94.7% | 55.9% |
| 3663147 | 3070.1.1.14 ↗ | a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins › RsfS | 0.51 | 35.0 | 3.43e-01 | 80.7% | 62.9% |
| 3708550 | 1056.1.1.0 ↗ | a+b two layers › tRNA pseudouridine synthase TruD insertion domain › tRNA pseudouridine synthase TruD insertion domain › tRNA pseudouridine synthase TruD insertion domain | 0.51 | 37.0 | 2.49e-01 | 80.7% | 48.4% |
| 3258836 | 2003.1.5.65 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DOT1 | 0.50 | 35.0 | 2.26e-01 | 75.4% | 61.8% |
| 3704999 | 2004.1.1.154 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_2,AAA_5 | 0.50 | 36.0 | 2.31e-01 | 82.5% | 75.5% |
| 3714823 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.50 | 38.0 | 3.70e-01 | 94.7% | 74.3% |