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IMGVR_UViG_3300009693_000804-3300009693-Ga0116141_100226078
Arc-VirIMGVR_UViG_3300009693_000804-3300009693-Ga0116141_100226078
Identity
- Kingdom:
- archaea
Quality
77.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 32-85
Domain cluster:
rep: Salt_Pond_R2_restored_H2O_MG_scaffold_3_prodigal-single.1__X__X__00126__D29-78
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5aj3Q00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.63 | 46.0 | 3.72e-01 | 79.6% | 52.3% |
| 3j7aV00 | 2.40.50.1000 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.62 | 48.0 | 3.64e-01 | 90.7% | 55.5% |
| 1cruA00 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.62 | 37.0 | 2.17e-01 | 83.3% | 6.9% |
| 7b1cD01 | 2.10.90.10 | Mainly Beta › Ribbon › Cystine Knot Cytokines, subunit B › Cystine-knot cytokines | 0.59 | 41.0 | 3.56e-01 | 74.1% | 95.5% |
| 4yfbC02 | 2.30.120.10 | Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region | 0.58 | 47.0 | 4.22e-01 | 94.4% | 76.9% |
| 1fm2B03 | 2.30.120.10 | Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region | 0.57 | 46.0 | 4.37e-01 | 92.6% | 72.7% |
| 6pfzD02 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.57 | 46.0 | 2.96e-01 | 90.7% | 21.4% |
| 3cgbA03 | 3.30.390.30 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain | 0.57 | 46.0 | 3.68e-01 | 90.7% | 50.0% |
| 3s5tA01 | 3.30.565.40 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Fervidobacterium nodosum Rt17-B1 like | 0.54 | 42.0 | 3.20e-01 | 92.6% | 43.8% |
| 1nhpA03 | 3.30.390.30 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain | 0.54 | 42.0 | 3.44e-01 | 88.9% | 75.2% |
| 4bqqB02 | 3.90.1750.20 | Alpha Beta › Alpha-Beta Complex › Hect, E3 ligase catalytic domain fold › Putative Large Serine Recombinase; Chain B, Domain 2 | 0.54 | 40.0 | 2.88e-01 | 85.2% | 68.9% |
| 4e72A01 | 3.30.565.40 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Fervidobacterium nodosum Rt17-B1 like | 0.54 | 41.0 | 3.29e-01 | 88.9% | 46.8% |
| 2z13A00 | 2.30.29.170 | Mainly Beta › Roll › PH-domain like › | 0.54 | 42.0 | 3.39e-01 | 90.7% | 73.5% |
| 4cbgD02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.52 | 38.0 | 2.75e-01 | 79.6% | 94.4% |
| 5jenA01 | 3.30.565.40 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Fervidobacterium nodosum Rt17-B1 like | 0.51 | 37.0 | 3.10e-01 | 87.0% | 41.4% |
| 1wq8A00 | 2.10.90.10 | Mainly Beta › Ribbon › Cystine Knot Cytokines, subunit B › Cystine-knot cytokines | 0.50 | 34.0 | 2.92e-01 | 72.2% | 79.8% |
| 1ffyA01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.50 | 39.0 | 2.44e-01 | 96.3% | 37.3% |
ECOD (22)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3402269 | 2.1.1.4 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S17 | 0.66 | 48.0 | 3.85e-01 | 79.6% | 51.8% |
| 4625119 | 2.1.1.4 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S17 | 0.65 | 48.0 | 4.10e-01 | 79.6% | 62.9% |
| 1553361 | 2.1.1.5 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S17,Ribosomal_S17_N | 0.62 | 47.0 | 4.05e-01 | 81.5% | 64.7% |
| 4856335 | 2.1.1.5 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S17,Ribosomal_S17_N | 0.62 | 49.0 | 3.63e-01 | 90.7% | 53.9% |
| 1553111 | 2.1.1.5 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S17,Ribosomal_S17_N | 0.61 | 49.0 | 3.58e-01 | 90.7% | 51.6% |
| 3593275 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.61 | 49.0 | 4.00e-01 | 92.6% | 49.1% |
| 5067682 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.60 | 48.0 | 4.14e-01 | 90.7% | 92.2% |
| 3596842 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.60 | 47.0 | 3.79e-01 | 92.6% | 49.2% |
| 3591170 | 220.1.1.14 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › DM10_dom | 0.59 | 46.0 | 3.67e-01 | 90.7% | 47.5% |
| 4228114 | 207.1.1.130 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1, LRR_5, LRR_8 | 0.58 | 38.0 | 2.40e-01 | 79.6% | 11.1% |
| 3728856 | 171.1.1.9 ↗ | alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3, Ribonucleas_3_3 | 0.58 | 42.0 | 2.84e-01 | 79.6% | 26.2% |
| 5035496 | 304.51.1.0 ↗ | a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related | 0.58 | 51.0 | 3.32e-01 | 100.0% | 91.8% |
| 3370992 | 304.48.1.21 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Thg1,Thg1C | 0.56 | 40.0 | 2.43e-01 | 79.6% | 10.1% |
| 3391330 | 220.1.1.14 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › DM10_dom | 0.56 | 44.0 | 3.56e-01 | 92.6% | 48.3% |
| 3986836 | 375.1.1.253 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-IS66 | 0.56 | 42.0 | 4.25e-01 | 100.0% | 87.3% |
| 3972797 | 4321.1.1.1 ↗ | a+b two layers › Peptidoglycan deacetylase N-terminal noncatalytic region › Peptidoglycan deacetylase N-terminal noncatalytic region › Peptidoglycan deacetylase N-terminal noncatalytic region › DUF3298 | 0.54 | 41.0 | 2.86e-01 | 88.9% | 27.8% |
| 3592572 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.54 | 38.0 | 3.19e-01 | 83.3% | 40.4% |
| 1829221 | 2.1.1.5 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S17,Ribosomal_S17_N | 0.54 | 40.0 | 3.10e-01 | 90.7% | 52.3% |
| 3782159 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.52 | 38.0 | 3.25e-01 | 81.5% | 93.7% |
| 1245468 | 391.1.1.1 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › fn1 | 0.52 | 34.0 | 3.72e-01 | 79.6% | 88.1% |
| 3243957 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.51 | 40.0 | 2.96e-01 | 90.7% | 41.2% |
| 3251381 | 295.1.1.4 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain | 0.50 | 39.0 | 3.81e-01 | 92.6% | 87.7% |