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IMGVR_UViG_3300009696_000319-3300009696-Ga0116177_1000132311
Arc-VirIMGVR_UViG_3300009696_000319-3300009696-Ga0116177_1000132311
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 62-178_196-241_339-394_448-462_474-545
Domain cluster:
rep: IMGVR_UViG_3300009548_000051-3300009548-Ga0116107_100150510__D56-158_348-396_436-459_480-556
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5wm1A05 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.59 | 20.0 | 3.27e-01 | 71.6% | 78.6% |
| 2obaA00 | 3.30.479.10 | Alpha Beta › 2-Layer Sandwich › Tetrahydropterin Synthase; Chain A › 6-pyruvoyl tetrahydropterin synthase/QueD | 0.58 | 20.0 | 3.13e-01 | 99.7% | 75.0% |
| 3gqcC04 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.57 | 20.0 | 3.12e-01 | 71.6% | 75.8% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4891117 | 4038.1.1.11 ↗ | alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › SU10_portal | 0.78 | 75.0 | 5.89e-01 | 100.0% | 87.8% |
| 4951452 | 212.1.1.18 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Lon_C | 0.57 | 16.0 | 2.58e-01 | 84.0% | 60.0% |
| 2856923 | 11.1.1.844 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › A2M, SVA | 0.51 | 16.0 | 2.85e-01 | 80.7% | 87.6% |
D2
medium
residues 242-338
Domain cluster:
representative
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1rl2A01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.69 | 23.0 | 3.01e-01 | 92.8% | 48.2% |
| 4pkcC00 | 6.20.90.20 | Special › Other non-globular › SH3 type barrels. › Benzylsuccinate synthase gamma subunit | 0.67 | 27.0 | 3.98e-01 | 92.8% | 87.8% |
| 2epbA00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.61 | 26.0 | 3.08e-01 | 95.9% | 52.9% |
| 2eyqA05 | 2.40.10.170 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.57 | 29.0 | 3.43e-01 | 100.0% | 72.9% |
| 1fmbA00 | 2.40.70.10 | Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases | 0.55 | 30.0 | 2.93e-01 | 100.0% | 45.2% |
| 2lt1A00 | 2.40.10.170 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.55 | 30.0 | 3.33e-01 | 100.0% | 65.3% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4962280 | 375.1.1.347 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › PF26237 | 0.67 | 32.0 | 4.52e-01 | 83.5% | 100.0% |
| 4952918 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.66 | 28.0 | 2.92e-01 | 78.4% | 42.2% |
| 5046254 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.65 | 31.0 | 4.10e-01 | 93.8% | 93.3% |
| 3447043 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.65 | 27.0 | 3.97e-01 | 99.0% | 100.0% |
| 3588750 | 243.3.1.3 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY | 0.64 | 31.0 | 3.46e-01 | 100.0% | 57.3% |
| 5049605 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.61 | 24.0 | 3.15e-01 | 74.2% | 63.6% |
| 5041400 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.60 | 30.0 | 4.01e-01 | 95.9% | 100.0% |
| 3231216 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.58 | 29.0 | 3.63e-01 | 100.0% | 86.0% |
| 4929236 | 3604.1.1.1 ↗ | a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion | 0.58 | 27.0 | 3.15e-01 | 94.8% | 58.6% |
| 4930970 | 375.1.1.338 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF7479 | 0.55 | 28.0 | 3.35e-01 | 97.9% | 76.4% |
| 5071179 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.55 | 28.0 | 3.38e-01 | 93.8% | 76.7% |
| 3927041 | 4.1.1.25 ↗ | beta barrels › SH3 › SH3 › SH3 › PAZ | 0.51 | 36.0 | 3.30e-01 | 92.8% | 54.6% |
| 3508088 | 7579.1.1.89 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › COesterase, BD-FAE | 0.51 | 44.0 | 2.76e-01 | 100.0% | 63.0% |
| 3925865 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.51 | 27.0 | 2.55e-01 | 95.9% | 40.0% |
| 3614906 | 4.26.1.8 ↗ | beta barrels › SH3 › Chromatin protein Cren7 › Chromatin protein Cren7 › Saf4_Yju2 | 0.50 | 30.0 | 3.47e-01 | 99.0% | 82.9% |
D3
medium
residues 556-694
Domain cluster:
representative
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2vixA03 | 1.20.1280.240 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.56 | 37.0 | 4.05e-01 | 75.5% | 82.3% |
| 2katA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.54 | 35.0 | 3.76e-01 | 78.4% | 76.5% |
| 2kj8A00 | 1.10.150.130 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain | 0.52 | 34.0 | 3.64e-01 | 84.2% | 77.1% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3177558 | 3922.1.1.0 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 | 0.60 | 34.0 | 3.89e-01 | 72.7% | 73.3% |
| 3458610 | 101.1.10.13 ↗ | alpha arrays › HTH › HTH › Cyclin-like › DUF3452 | 0.57 | 38.0 | 3.91e-01 | 75.5% | 70.8% |
| 3935344 | 133.1.1.1 ↗ | alpha bundles › DH domain-like › DBL homology domain (DH-domain) › DBL homology domain (DH-domain) › RhoGEF | 0.54 | 41.0 | 3.44e-01 | 78.4% | 96.5% |
| 3310956 | 630.1.1.0 ↗ | a+b complex topology › RuBisCo LSMT C-terminal, substrate-binding domain › RuBisCo LSMT C-terminal, substrate-binding domain › RuBisCo LSMT C-terminal, substrate-binding domain | 0.51 | 39.0 | 3.83e-01 | 79.9% | 94.0% |
| 3661547 | 109.3.1.182 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Rx_N | 0.51 | 30.0 | 3.04e-01 | 74.8% | 55.2% |