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IMGVR_UViG_3300009706_002605-3300009706-Ga0115002_100181746
Arc-VirIMGVR_UViG_3300009706_002605-3300009706-Ga0115002_100181746
Identity
- Kingdom:
- archaea
Quality
82.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 65-230
Domain cluster:
representative
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1h19A02 | 3.30.2010.30 | Alpha Beta › 2-Layer Sandwich › Zincin-like › | 0.75 | 44.0 | 5.70e-01 | 100.0% | 100.0% |
| 4ar9A01 | 3.40.30.160 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Collagenase ColT, N-terminal domain | 0.66 | 48.0 | 5.21e-01 | 100.0% | 88.0% |
| 7y7oA01 | 3.40.390.30 | Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › "Metalloproteases (""zincins""), catalytic domain" | 0.64 | 43.0 | 4.63e-01 | 83.7% | 79.0% |
| 3wgtA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.56 | 46.0 | 4.31e-01 | 86.1% | 99.0% |
| 4zkdA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.55 | 45.0 | 3.92e-01 | 87.3% | 94.8% |
| 6mh4A03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.51 | 24.0 | 3.42e-01 | 80.1% | 94.9% |
| 2kptA00 | 3.10.310.50 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › | 0.50 | 36.0 | 3.84e-01 | 91.6% | 84.5% |
ECOD (18)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4314938 | 2498.1.1.22 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YbeY | 0.70 | 46.0 | 5.06e-01 | 83.7% | 81.0% |
| 3608170 | 2498.1.1.22 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YbeY | 0.64 | 45.0 | 4.81e-01 | 84.3% | 80.7% |
| 4334043 | 2498.1.1.22 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YbeY | 0.63 | 44.0 | 4.73e-01 | 83.1% | 83.6% |
| 4088061 | 2498.1.1.22 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YbeY | 0.62 | 46.0 | 4.70e-01 | 84.3% | 78.1% |
| 4373220 | 2498.1.1.22 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YbeY | 0.62 | 46.0 | 4.68e-01 | 85.5% | 77.9% |
| 4508258 | 2498.1.1.22 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YbeY | 0.60 | 44.0 | 4.63e-01 | 84.9% | 82.7% |
| 4235014 | 2498.1.1.22 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YbeY | 0.60 | 44.0 | 4.59e-01 | 84.9% | 82.7% |
| 4094432 | 2498.1.1.22 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YbeY | 0.59 | 45.0 | 4.32e-01 | 83.7% | 69.2% |
| 4299039 | 2498.1.1.22 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YbeY | 0.59 | 46.0 | 4.76e-01 | 83.7% | 85.0% |
| 3617842 | 198.1.1.0 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like | 0.56 | 26.0 | 3.41e-01 | 71.7% | 82.5% |
| 4588088 | 2003.1.3.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO | 0.55 | 46.0 | 4.06e-01 | 87.3% | 98.7% |
| 1563515 | 2004.1.1.14 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU | 0.55 | 45.0 | 3.90e-01 | 87.3% | 93.7% |
| 5016481 | 2498.2.1.6 ↗ | mixed a+b and a/b › Zincin-like › beta-N-acetylhexosaminidase-like domain › beta-N-acetylhexosaminidase-like domain › S_layer_C | 0.54 | 41.0 | 4.36e-01 | 94.0% | 89.7% |
| 3472580 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.53 | 43.0 | 4.18e-01 | 86.1% | 98.9% |
| 3988801 | 3414.1.1.5 ↗ | beta sandwiches › A putative surface protein › A putative surface protein › A putative surface protein › Big_4 | 0.52 | 26.0 | 3.45e-01 | 77.7% | 87.8% |
| 3733783 | 2004.1.1.73 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 | 0.52 | 42.0 | 3.54e-01 | 86.7% | 76.8% |
| 3510656 | 2485.1.1.71 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › SelP_N | 0.51 | 37.0 | 3.82e-01 | 89.8% | 78.8% |
| 3698149 | 7504.1.1.5 ↗ | a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › DUF5427 | 0.50 | 41.0 | 3.74e-01 | 86.7% | 99.1% |
D2
high
residues 249-380
Domain cluster:
representative
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1bw6A00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.54 | 24.0 | 3.38e-01 | 93.9% | 92.9% |
| 7sf8A01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.53 | 38.0 | 3.16e-01 | 73.5% | 83.0% |
| 3d6jA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.52 | 24.0 | 3.18e-01 | 87.1% | 80.6% |
| 6mgiA03 | 1.20.1440.90 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Phosphoenolpyruvate/pyruvate domain | 0.52 | 32.0 | 3.25e-01 | 100.0% | 58.4% |
| 4ikmA02 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.52 | 25.0 | 2.92e-01 | 90.2% | 61.3% |
| 1cy5A00 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.51 | 25.0 | 2.88e-01 | 89.4% | 62.0% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4670439 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.77 | 64.0 | 5.23e-01 | 94.7% | 50.7% |
| 3618514 | 2498.1.1.9 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M1 | 0.72 | 63.0 | 5.10e-01 | 93.2% | 53.3% |
| 3521686 | 110.1.1.2 ↗ | alpha arrays › DEATH domain › DEATH domain › DEATH domain › CARD | 0.52 | 24.0 | 2.89e-01 | 89.4% | 62.2% |
| 4176972 | 160.1.1.1 ↗ | alpha superhelices › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase › ATP-synt_ab_C | 0.51 | 33.0 | 3.28e-01 | 93.2% | 61.4% |
| 4666969 | 160.1.1.0 ↗ | alpha superhelices › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase | 0.51 | 33.0 | 3.28e-01 | 93.2% | 61.4% |
| 4127912 | 160.1.1.1 ↗ | alpha superhelices › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase › ATP-synt_ab_C | 0.51 | 33.0 | 3.37e-01 | 92.4% | 66.2% |