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IMGVR_UViG_3300009707_000076-3300009707-Ga0116195_100113633

Arc-Vir

IMGVR_UViG_3300009707_000076-3300009707-Ga0116195_100113633

Identity

Kingdom:
archaea

Quality

94.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-61
PDB
Domain cluster: representative
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4fmrA02 4.10.520.10 Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins 0.63 37.0 3.12e-01 100.0% 36.4%
3kluA01 3.30.2220.30 Alpha Beta › 2-Layer Sandwich › rbstp2171 › 0.60 40.0 3.24e-01 70.9% 61.8%
1krlA00 6.20.50.130 Special › Other non-globular › N-terminal domain of TfIIb › 0.59 38.0 4.01e-01 72.7% 79.5%
2akjA03 3.30.413.10 Alpha Beta › 2-Layer Sandwich › Sulfite Reductase Hemoprotein; domain 1 › Sulfite Reductase Hemoprotein, domain 1 0.58 47.0 3.76e-01 96.4% 48.0%
5ja1B00 3.90.820.10 Alpha Beta › Alpha-Beta Complex › Rubredoxin-like › Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id 0.58 48.0 4.58e-01 94.5% 80.3%
3ci0I00 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.55 38.0 3.29e-01 78.2% 47.0%
2wkcB00 2.40.50.400 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Lactococcus phage single-stranded DNA binding protein 0.55 37.0 3.25e-01 70.9% 95.5%
2retA00 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.54 37.0 3.24e-01 78.2% 47.6%
2pwwA00 3.30.310.100 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › YugN-like 0.54 39.0 3.04e-01 76.4% 96.5%
3pesA00 3.30.300.260 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › 0.53 38.0 3.39e-01 78.2% 61.4%
4z9cB00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.53 45.0 3.65e-01 100.0% 49.6%
4e4tA03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.53 43.0 3.07e-01 100.0% 82.7%
1uuzB00 3.40.1420.10 Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › Inhibitor of vertebrate lysozyme 0.53 38.0 2.86e-01 76.4% 34.4%
1ln1A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.53 45.0 3.12e-01 100.0% 84.7%
3iq2A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.52 45.0 3.56e-01 100.0% 69.9%
3en9A03 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.52 36.0 3.31e-01 72.7% 57.5%
1j5yA02 3.30.1340.20 Alpha Beta › 2-Layer Sandwich › Histidine-containing Protein; Chain: A; › 3H domain 0.52 42.0 3.37e-01 89.1% 95.3%
3bxpB00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.51 40.0 2.72e-01 96.4% 75.6%
1vq8B03 3.30.1430.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L3; Chain: B; domain 2, › 0.51 41.0 3.40e-01 96.4% 95.5%
3sluA02 3.10.450.350 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 38.0 3.04e-01 89.1% 89.8%
2wb8A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.50 41.0 2.93e-01 89.1% 73.9%
4u7cB04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.50 42.0 3.51e-01 100.0% 57.8%
3tx8A02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.50 36.0 2.91e-01 78.2% 86.8%
ECOD (41)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4240651 101.17.1.1 ↗ alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding 0.74 38.0 3.10e-01 100.0% 28.0%
3520868 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.72 62.0 4.50e-01 100.0% 36.4%
3945393 7089.1.1.2 ↗ a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › DUF5405 0.71 62.0 5.42e-01 100.0% 66.3%
3473111 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.69 63.0 3.66e-01 100.0% 12.3%
3484705 220.1.1.61 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C_FAK1 0.69 63.0 4.62e-01 100.0% 42.1%
3665260 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.69 47.0 3.10e-01 70.9% 55.1%
3957641 252.2.1.0 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.67 59.0 5.95e-01 98.2% 96.4%
5029914 252.2.1.0 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.64 53.0 5.37e-01 98.2% 92.7%
1919590 101.17.1.2 ↗ alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › HU-DNA_bdg 0.63 37.0 2.81e-01 100.0% 26.7%
3610992 376.1.1.5 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-UBP 0.61 36.0 2.97e-01 83.6% 28.6%
3270895 304.107.1.5 ↗ a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain › BCS1_N 0.61 47.0 3.67e-01 83.6% 96.5%
5027780 252.2.1.0 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.60 51.0 5.02e-01 98.2% 91.7%
3659556 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.60 40.0 4.26e-01 72.7% 91.1%
3698801 2004.1.1.250 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd 0.59 46.0 2.79e-01 87.3% 19.2%
None — 0.59 45.0 2.85e-01 85.5% 36.8%
3594386 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.59 45.0 3.79e-01 83.6% 96.8%
4779411 243.3.1.6 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Monellin 0.58 36.0 3.90e-01 72.7% 79.5%
3695635 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.57 38.0 3.30e-01 70.9% 43.3%
3226947 220.1.1.7 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › IRS 0.57 46.0 3.76e-01 100.0% 47.6%
4990321 2484.1.1.59 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › NurA 0.57 49.0 3.29e-01 100.0% 25.2%
4002771 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 46.0 3.47e-01 100.0% 37.0%
3984883 274.1.1.4 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits › T2SSI 0.55 38.0 2.97e-01 78.2% 34.8%
3977405 4312.1.1.4 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › Gp49 0.54 44.0 3.79e-01 100.0% 55.0%
4090939 330.4.1.1 ↗ a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.54 44.0 4.02e-01 100.0% 67.5%
3438132 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.54 47.0 3.82e-01 100.0% 52.4%
4020297 330.1.1.3 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Dicer_dimer 0.53 47.0 3.66e-01 100.0% 52.5%
3315568 2484.1.1.67 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.53 47.0 4.34e-01 100.0% 80.0%
3782497 4263.2.1.0 ↗ a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain 0.53 45.0 3.98e-01 100.0% 63.5%
3349683 64.5.1.0 ↗ beta meanders › WW domain-like › Connector region of RNA helicase HrpB › Connector region of RNA helicase HrpB 0.53 37.0 3.64e-01 74.5% 83.3%
4400500 223.1.1.132 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS, sCache_3_2 0.53 35.0 2.21e-01 72.7% 12.9%
4960069 210.1.3.3 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_4 0.53 42.0 2.85e-01 92.7% 40.9%
3841771 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.53 46.0 3.37e-01 100.0% 60.0%
3942396 4.1.1.412 ↗ beta barrels › SH3 › SH3 › SH3 › DUF1062 0.52 43.0 3.79e-01 98.2% 62.2%
3231135 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 43.0 3.45e-01 100.0% 46.4%
4203354 252.2.1.9 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › PF27551 0.52 43.0 3.70e-01 98.2% 67.4%
5051418 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.51 39.0 3.13e-01 92.7% 68.1%
3271570 223.2.1.22 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Folliculin 0.51 41.0 3.04e-01 100.0% 34.3%
3867207 4.8.1.10 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like 0.51 41.0 3.49e-01 90.9% 85.3%
4308194 330.4.1.1 ↗ a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.51 42.0 3.76e-01 100.0% 82.4%
3940407 372.2.1.1 ↗ a+b complex topology › RNase A-like › EndoU-like › EndoU-like › XendoU 0.50 39.0 2.52e-01 90.9% 71.3%
4490768 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.50 37.0 2.00e-01 78.2% 3.8%