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IMGVR_UViG_3300009707_000088-3300009707-Ga0116195_100379316
Arc-VirIMGVR_UViG_3300009707_000088-3300009707-Ga0116195_100379316
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-40_85-222
D2
medium
residues 223-296
Domain cluster:
representative
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4emhA00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.63 | 41.0 | 4.43e-01 | 91.9% | 81.7% |
| 1nvpD02 | 2.30.18.10 | Mainly Beta › Roll › TATA box binding Protein, subunit D; domain 2 › Transcription factor IIA (TFIIA), beta-barrel domain | 0.62 | 38.0 | 4.33e-01 | 82.4% | 95.7% |
| 4c92G00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.59 | 41.0 | 4.11e-01 | 83.8% | 72.0% |
| 1nh2C00 | 2.30.18.10 | Mainly Beta › Roll › TATA box binding Protein, subunit D; domain 2 › Transcription factor IIA (TFIIA), beta-barrel domain | 0.59 | 35.0 | 4.04e-01 | 82.4% | 86.0% |
| 4fvmA03 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.56 | 47.0 | 3.37e-01 | 94.6% | 57.3% |
| 4qclA03 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.55 | 45.0 | 3.14e-01 | 94.6% | 48.0% |
| 1d5aA02 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.54 | 45.0 | 3.29e-01 | 94.6% | 47.5% |
| 4ia6B01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.54 | 44.0 | 3.00e-01 | 93.2% | 41.4% |
| 1evuA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 42.0 | 3.30e-01 | 87.8% | 78.6% |
| 4d6wA03 | 2.30.29.130 | Mainly Beta › Roll › PH-domain like › | 0.51 | 42.0 | 3.98e-01 | 98.6% | 92.6% |
| 1wydA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.51 | 36.0 | 3.23e-01 | 74.3% | 79.4% |
| 3ammA00 | 2.60.120.180 | Mainly Beta › Sandwich › Jelly Rolls › Glycoside hydrolase family 11/12, catalytic domain | 0.50 | 35.0 | 2.57e-01 | 77.0% | 98.8% |
ECOD (26)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3167351 | 4.1.1.19 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM | 0.63 | 42.0 | 3.98e-01 | 85.1% | 58.0% |
| 3797626 | 74.1.1.0 ↗ | beta duplicates or obligate multimers › Transcription factor IIA (TFIIA), beta-barrel domain › Transcription factor IIA (TFIIA), beta-barrel domain › Transcription factor IIA (TFIIA), beta-barrel domain | 0.62 | 37.0 | 4.13e-01 | 85.1% | 79.6% |
| 4983255 | 4.1.1.19 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM | 0.60 | 40.0 | 4.05e-01 | 85.1% | 69.3% |
| 4938115 | 4.1.1.19 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM | 0.59 | 42.0 | 4.24e-01 | 85.1% | 74.3% |
| 2770992 | 74.1.1.2 ↗ | beta duplicates or obligate multimers › Transcription factor IIA (TFIIA), beta-barrel domain › Transcription factor IIA (TFIIA), beta-barrel domain › Transcription factor IIA (TFIIA), beta-barrel domain › TFIIA | 0.59 | 35.0 | 3.83e-01 | 82.4% | 73.3% |
| 3995211 | 74.1.1.2 ↗ | beta duplicates or obligate multimers › Transcription factor IIA (TFIIA), beta-barrel domain › Transcription factor IIA (TFIIA), beta-barrel domain › Transcription factor IIA (TFIIA), beta-barrel domain › TFIIA | 0.58 | 35.0 | 3.99e-01 | 83.8% | 81.5% |
| 4025068 | 74.1.1.0 ↗ | beta duplicates or obligate multimers › Transcription factor IIA (TFIIA), beta-barrel domain › Transcription factor IIA (TFIIA), beta-barrel domain › Transcription factor IIA (TFIIA), beta-barrel domain | 0.58 | 36.0 | 4.00e-01 | 83.8% | 91.8% |
| 4282509 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.58 | 47.0 | 2.85e-01 | 93.2% | 18.1% |
| 3612874 | 2484.1.1.13 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T | 0.57 | 47.0 | 3.28e-01 | 94.6% | 43.9% |
| 2801086 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.57 | 47.0 | 3.08e-01 | 93.2% | 28.3% |
| 3599368 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.57 | 47.0 | 3.35e-01 | 94.6% | 49.2% |
| 3988431 | 2484.1.1.13 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T | 0.56 | 46.0 | 3.52e-01 | 91.9% | 55.0% |
| 4874454 | 2.1.1.25 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_pol_B_exo1 | 0.56 | 46.0 | 3.22e-01 | 94.6% | 49.1% |
| 1790898 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.56 | 47.0 | 3.21e-01 | 94.6% | 48.3% |
| 4261005 | 2484.1.1.36 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_2 | 0.56 | 46.0 | 3.21e-01 | 94.6% | 31.3% |
| 4452101 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.55 | 45.0 | 3.35e-01 | 94.6% | 46.4% |
| 3532301 | 6129.1.1.1 ↗ | beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD | 0.55 | 42.0 | 3.17e-01 | 86.5% | 70.7% |
| 4500300 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.55 | 45.0 | 2.92e-01 | 94.6% | 24.7% |
| 4028824 | 74.1.1.0 ↗ | beta duplicates or obligate multimers › Transcription factor IIA (TFIIA), beta-barrel domain › Transcription factor IIA (TFIIA), beta-barrel domain › Transcription factor IIA (TFIIA), beta-barrel domain | 0.54 | 36.0 | 4.01e-01 | 85.1% | 94.4% |
| 4861115 | 1.1.13.22 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › SP2_C | 0.54 | 43.0 | 3.53e-01 | 91.9% | 72.4% |
| 3846048 | 6129.1.1.1 ↗ | beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD | 0.54 | 41.0 | 3.11e-01 | 86.5% | 70.7% |
| 2117499 | 2484.1.1.20 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_A_exo1 | 0.53 | 43.0 | 3.24e-01 | 91.9% | 38.5% |
| 5032676 | 74.1.1.0 ↗ | beta duplicates or obligate multimers › Transcription factor IIA (TFIIA), beta-barrel domain › Transcription factor IIA (TFIIA), beta-barrel domain › Transcription factor IIA (TFIIA), beta-barrel domain | 0.52 | 32.0 | 3.59e-01 | 87.8% | 90.0% |
| 3405083 | 883.1.1.3 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › JHBP | 0.51 | 41.0 | 3.00e-01 | 86.5% | 62.0% |
| 4154416 | 6129.1.1.1 ↗ | beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD | 0.51 | 41.0 | 3.21e-01 | 91.9% | 66.3% |
| 5022113 | 4252.1.1.0 ↗ | beta barrels › AttH-like › AttH-like › AttH-like | 0.51 | 38.0 | 3.17e-01 | 83.8% | 91.7% |
D3
medium
residues 297-315_473-582
Domain cluster:
rep: IMGVR_UViG_3300021500_000084-3300021500-Ga0190347_10015441__D10-41_191-280
D4
medium
residues 316-472
Domain cluster:
rep: IMGVR_UViG_3300025156_000428-3300025156-Ga0209834_1000016618__D251-401