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IMGVR_UViG_3300009708_000083-3300009708-Ga0116194_100166727

Arc-Vir

IMGVR_UViG_3300009708_000083-3300009708-Ga0116194_100166727

Identity

Kingdom:
archaea

Quality

77.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-52
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2m6pA00 2.20.28.270 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › RNA polymerase-binding protein A 0.63 45.0 4.63e-01 82.4% 84.8%
3ir9A02 3.30.1330.30 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Ribosomal protein L30/S12 0.61 49.0 3.94e-01 100.0% 43.3%
2eixA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.58 44.0 3.60e-01 86.3% 57.5%
1jx4A04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.58 45.0 3.77e-01 90.2% 57.1%
1pqzA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 43.0 3.51e-01 82.4% 82.2%
2orzA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.57 43.0 3.18e-01 88.2% 36.4%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.54 41.0 3.00e-01 88.2% 47.3%
1xauA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 40.0 3.28e-01 82.4% 77.9%
4m0wA03 2.60.120.1680 Mainly Beta › Sandwich › Jelly Rolls › 0.53 42.0 3.21e-01 92.2% 94.2%
2e26A01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.53 44.0 3.02e-01 100.0% 67.5%
4r3dA03 2.60.120.1680 Mainly Beta › Sandwich › Jelly Rolls › 0.52 41.0 3.14e-01 92.2% 94.2%
6hj2A00 1.10.565.10 Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor 0.52 35.0 2.35e-01 76.5% 40.5%
1djsA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 40.0 3.36e-01 94.1% 52.0%
3in6A02 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 40.0 3.21e-01 92.2% 53.8%
1ogpA02 2.60.40.650 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 34.0 2.77e-01 76.5% 29.9%
ECOD (10)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2640865 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.67 53.0 5.21e-01 90.2% 87.3%
3668092 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.65 50.0 4.83e-01 100.0% 75.0%
5000767 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.64 49.0 5.02e-01 90.2% 90.0%
3604642 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.63 46.0 4.82e-01 88.2% 95.6%
4995774 375.1.1.185 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_8 0.60 42.0 4.53e-01 80.4% 97.5%
3277720 375.1.1.185 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_8 0.60 42.0 4.42e-01 84.3% 97.5%
4003494 221.14.1.1 ↗ a+b two layers › beta-Grasp › TAR DNA-binding protein 43 N-terminal domain › TAR DNA-binding protein 43 N-terminal domain › TDP43_N 0.58 43.0 3.68e-01 86.3% 91.6%
3412356 821.1.1.8 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › ANKLE2_3rd 0.57 46.0 3.72e-01 100.0% 91.3%
4941241 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.56 42.0 4.30e-01 90.2% 92.0%
5030549 375.1.3.1 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Hypothetical protein MTH1184 › DUF1922 0.52 42.0 4.21e-01 100.0% 100.0%