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IMGVR_UViG_3300009711_000960-3300009711-Ga0116166_10139125
Arc-VirIMGVR_UViG_3300009711_000960-3300009711-Ga0116166_10139125
Identity
- Kingdom:
- archaea
Quality
58.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 2-38
Domain cluster:
representative
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3hkoA02 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.66 | 50.0 | 3.16e-01 | 89.2% | 21.7% |
| 2g8sB00 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.63 | 49.0 | 2.91e-01 | 91.9% | 46.7% |
| 1wxrA03 | 3.30.160.280 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.61 | 45.0 | 3.80e-01 | 89.2% | 76.3% |
| 3cp2A02 | 2.40.30.260 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.61 | 46.0 | 3.58e-01 | 94.6% | 59.6% |
| 3igmA00 | 1.20.5.2050 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.58 | 44.0 | 3.97e-01 | 94.6% | 57.1% |
| 4bq6F00 | 3.40.1000.10 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich | 0.58 | 42.0 | 2.98e-01 | 94.6% | 21.5% |
| 2jeuA02 | 2.170.200.10 | Mainly Beta › Beta Complex › Regulatory Protein E2; Chain: A; Domain 2 › Papillomavirus E2 early protein domain | 0.58 | 43.0 | 3.44e-01 | 97.3% | 54.5% |
| 1hp7A01 | 2.30.39.10 | Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 | 0.58 | 42.0 | 3.34e-01 | 89.2% | 67.4% |
| 3gdoA02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.58 | 44.0 | 2.93e-01 | 97.3% | 30.2% |
| 6a97C01 | 3.30.500.10 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like | 0.57 | 40.0 | 2.98e-01 | 86.5% | 46.6% |
| 2p25A01 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.56 | 40.0 | 2.99e-01 | 83.8% | 73.9% |
| 1e6vC00 | 3.90.320.20 | Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › Methyl-coenzyme M reductase, gamma subunit | 0.56 | 46.0 | 2.83e-01 | 94.6% | 14.9% |
| 2fhdA02 | 2.30.30.810 | Mainly Beta › Roll › SH3 type barrels. › | 0.55 | 39.0 | 3.42e-01 | 89.2% | 79.2% |
| 1ei5A02 | 2.40.128.50 | Mainly Beta › Beta Barrel › Lipocalin › | 0.54 | 38.0 | 3.24e-01 | 91.9% | 39.0% |
| 3ib5A00 | 3.10.570.10 | Alpha Beta › Roll › sex pheromone staph- cam373 precursor fold › sex pheromone staph- cam373 precursor domain | 0.54 | 42.0 | 2.57e-01 | 100.0% | 43.9% |
| 3fhwA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.52 | 36.0 | 2.96e-01 | 86.5% | 44.4% |
| 2iz4A02 | 2.20.25.590 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.52 | 40.0 | 3.87e-01 | 86.5% | 73.8% |
| 2nvmA00 | 3.30.310.110 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › XisI-like | 0.51 | 36.0 | 2.90e-01 | 89.2% | 52.9% |
| 2wdqA04 | 4.10.80.40 | Few Secondary Structures › Irregular › Rhinovirus 14, subunit 4 › succinate dehydrogenase protein domain | 0.51 | 34.0 | 3.36e-01 | 70.3% | 61.0% |
| 4jpbW02 | 2.40.50.180 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › CheA-289, Domain 4 | 0.50 | 36.0 | 3.18e-01 | 100.0% | 60.8% |
| 2mjlA00 | 3.40.50.1470 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidyl-tRNA hydrolase | 0.50 | 35.0 | 2.42e-01 | 89.2% | 30.5% |
| 2psmC01 | 2.20.28.230 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.50 | 37.0 | 3.51e-01 | 94.6% | 80.8% |
ECOD (46)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4004358 | 252.2.1.3 ↗ | a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › Arm-DNA-bind_1 | 0.74 | 57.0 | 5.24e-01 | 86.5% | 68.0% |
| 4974065 | 4.6.1.2 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC | 0.70 | 54.0 | 4.71e-01 | 89.2% | 80.0% |
| 4945330 | 4294.1.1.11 ↗ | few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like › ResIII | 0.68 | 50.0 | 4.25e-01 | 97.3% | 45.7% |
| 3927894 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.66 | 48.0 | 3.43e-01 | 86.5% | 25.9% |
| 3178258 | 101.1.8.0 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes | 0.66 | 50.0 | 3.30e-01 | 89.2% | 20.6% |
| 3468885 | 252.2.1.1 ↗ | a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › AP2 | 0.66 | 55.0 | 4.39e-01 | 100.0% | 55.0% |
| 3874321 | 389.1.2.7 ↗ | few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain › THBD | 0.66 | 51.0 | 4.41e-01 | 100.0% | 70.0% |
| 3287903 | 802.1.1.1 ↗ | a+b two layers › Hypothetical protein TM0160 › Hypothetical protein TM0160 › Hypothetical protein TM0160 › BFN_dom | 0.64 | 47.0 | 4.41e-01 | 86.5% | 68.0% |
| 3703176 | 64.1.1.0 ↗ | beta meanders › WW domain-like › WW domain › WW domain | 0.63 | 46.0 | 4.51e-01 | 86.5% | 72.7% |
| 5067001 | 2005.1.1.10 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ETF | 0.63 | 47.0 | 3.07e-01 | 86.5% | 64.6% |
| 3792226 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.63 | 48.0 | 4.23e-01 | 89.2% | 70.0% |
| 3609095 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.63 | 48.0 | 4.30e-01 | 100.0% | 90.8% |
| 5029687 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.62 | 46.0 | 4.47e-01 | 94.6% | 73.3% |
| 3518993 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.62 | 45.0 | 4.57e-01 | 86.5% | 91.4% |
| 3708448 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.62 | 47.0 | 4.14e-01 | 100.0% | 98.6% |
| 3937892 | 11.2.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 | 0.62 | 45.0 | 2.98e-01 | 86.5% | 65.8% |
| 2529925 | 11.1.5.53 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › GBS104-like_Ig | 0.60 | 42.0 | 3.48e-01 | 81.1% | 44.4% |
| 4027686 | 252.2.1.0 ↗ | a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like | 0.60 | 45.0 | 4.13e-01 | 91.9% | 85.5% |
| 3177133 | 193.1.1.1 ↗ | alpha bundles › CH domain-like › Calponin-homology domain-like › Calponin-homology domain-like › CH | 0.59 | 44.0 | 2.99e-01 | 86.5% | 20.0% |
| 3692341 | 2003.1.2.5 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FMO-like | 0.59 | 43.0 | 2.58e-01 | 83.8% | 9.1% |
| 119401 | 252.2.1.1 ↗ | a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › AP2 | 0.59 | 43.0 | 3.91e-01 | 97.3% | 53.2% |
| 4951073 | 3651.1.1.1 ↗ | alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › IF-2B | 0.59 | 43.0 | 3.05e-01 | 83.8% | 57.0% |
| 5044376 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.59 | 43.0 | 2.56e-01 | 83.8% | 8.9% |
| 3259777 | 3651.1.1.1 ↗ | alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › IF-2B | 0.58 | 42.0 | 3.12e-01 | 97.3% | 26.9% |
| 3189282 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.57 | 40.0 | 4.13e-01 | 78.4% | 96.7% |
| 3632189 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.57 | 40.0 | 3.60e-01 | 86.5% | 47.7% |
| 3271846 | 391.1.2.0 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related | 0.57 | 43.0 | 4.04e-01 | 100.0% | 81.8% |
| 1923797 | 377.1.1.28 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Pcf11_C | 0.57 | 41.0 | 3.36e-01 | 78.4% | 38.2% |
| 1558018 | 4091.1.1.1 ↗ | beta complex topology › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like › YkuD | 0.57 | 42.0 | 2.96e-01 | 97.3% | 23.8% |
| 3432877 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.57 | 46.0 | 4.08e-01 | 100.0% | 89.2% |
| 3702861 | 375.1.1.19 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD | 0.56 | 39.0 | 3.55e-01 | 81.1% | 49.1% |
| 3173796 | 331.1.1.5 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › OGG_N | 0.56 | 42.0 | 3.53e-01 | 97.3% | 52.9% |
| 5073666 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.55 | 38.0 | 2.34e-01 | 83.8% | 9.3% |
| 3737235 | 12.1.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain | 0.55 | 39.0 | 3.46e-01 | 86.5% | 47.7% |
| 3246607 | 11.2.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 | 0.55 | 42.0 | 2.80e-01 | 97.3% | 46.9% |
| 4027687 | 330.3.1.0 ↗ | a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like | 0.55 | 43.0 | 3.91e-01 | 91.9% | 85.5% |
| 4991479 | 2005.1.1.15 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ATP-sulfurylase | 0.53 | 38.0 | 2.39e-01 | 83.8% | 62.3% |
| 4029445 | 252.2.1.1 ↗ | a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › AP2 | 0.53 | 45.0 | 4.07e-01 | 100.0% | 83.6% |
| 4991056 | 375.1.1.63 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › LysW-like_globular | 0.53 | 40.0 | 3.75e-01 | 100.0% | 67.3% |
| 4028013 | 252.2.1.1 ↗ | a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › AP2 | 0.53 | 41.0 | 3.51e-01 | 100.0% | 72.0% |
| 4029439 | 252.2.1.0 ↗ | a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like | 0.53 | 43.0 | 3.69e-01 | 100.0% | 71.0% |
| 3704274 | 2.1.1.39 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RNA_pol_Rbc25 | 0.53 | 38.0 | 2.77e-01 | 94.6% | 77.3% |
| 4024572 | 7516.1.1.1 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › NTP_transferase | 0.52 | 38.0 | 2.36e-01 | 83.8% | 11.7% |
| 5073026 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.52 | 37.0 | 3.65e-01 | 97.3% | 74.0% |
| 3704344 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.52 | 37.0 | 3.33e-01 | 86.5% | 53.8% |
| 4927153 | 375.1.1.63 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › LysW-like_globular | 0.51 | 38.0 | 3.60e-01 | 100.0% | 65.5% |