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IMGVR_UViG_3300009713_000223-3300009713-Ga0116163_10054582

Arc-Vir

IMGVR_UViG_3300009713_000223-3300009713-Ga0116163_10054582

Identity

Kingdom:
archaea

Quality

78.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-75
PDB
Domain cluster: representative
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3o2pE00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 63.0 5.88e-01 100.0% 76.7%
4esjA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 62.0 5.77e-01 100.0% 76.7%
1cf7A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 55.0 5.64e-01 100.0% 89.6%
4fcyB02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.70 53.0 5.45e-01 87.0% 87.7%
1u5tB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 61.0 5.73e-01 100.0% 96.5%
7dg2C01 1.10.10.1200 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › MAGE homology domain, winged helix WH1 motif 0.68 60.0 5.90e-01 100.0% 96.0%
2p5kA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 55.0 5.80e-01 100.0% 96.8%
4mtdD01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 56.0 5.19e-01 100.0% 72.7%
2kloA00 1.10.10.1420 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › DNA replication factor Cdt1, C-terminal WH domain 0.67 59.0 4.73e-01 100.0% 50.7%
1ucrB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 55.0 5.41e-01 98.6% 85.3%
4etsA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 54.0 5.06e-01 100.0% 73.6%
2hs5A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 52.0 5.31e-01 100.0% 95.5%
6qv3A05 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 54.0 5.02e-01 100.0% 91.4%
2m1uA01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.60 45.0 4.59e-01 100.0% 85.1%
1cbyA00 3.40.198.10 Alpha Beta › 3-Layer(aba) Sandwich › Delta-endotoxin CytB › Delta-endotoxin CytB-like 0.58 51.0 3.58e-01 100.0% 74.4%
4bzaA01 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.56 42.0 4.24e-01 89.9% 83.8%
3k7dA03 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.52 37.0 3.08e-01 75.4% 94.8%
2aplA01 1.10.8.330 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › PG0816-like 0.51 36.0 3.64e-01 72.5% 80.9%
2r2iA02 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.51 40.0 3.75e-01 87.0% 69.0%
3zlaD01 1.20.142.20 Mainly Alpha › Up-down Bundle › Poly(ADP-ribose) Polymerase; domain 1 › 0.51 41.0 3.55e-01 97.1% 83.3%
2be4A01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.50 43.0 4.12e-01 100.0% 88.9%
ECOD (59)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3729476 101.1.2.34 ↗ alpha arrays › HTH › HTH › winged helix domain › RFX_DNA_binding 0.86 80.0 6.59e-01 100.0% 63.5%
3993626 101.1.2.34 ↗ alpha arrays › HTH › HTH › winged helix domain › RFX_DNA_binding 0.85 79.0 7.29e-01 100.0% 85.9%
3177239 101.1.2.34 ↗ alpha arrays › HTH › HTH › winged helix domain › RFX_DNA_binding 0.85 79.0 6.17e-01 100.0% 54.8%
4012878 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.84 78.0 6.46e-01 100.0% 63.5%
3537242 101.1.2.34 ↗ alpha arrays › HTH › HTH › winged helix domain › RFX_DNA_binding 0.84 78.0 6.78e-01 100.0% 75.0%
3883278 101.1.2.34 ↗ alpha arrays › HTH › HTH › winged helix domain › RFX_DNA_binding 0.83 77.0 6.80e-01 100.0% 77.9%
3498779 101.1.2.34 ↗ alpha arrays › HTH › HTH › winged helix domain › RFX_DNA_binding 0.83 76.0 7.06e-01 100.0% 90.6%
3898745 101.1.2.34 ↗ alpha arrays › HTH › HTH › winged helix domain › RFX_DNA_binding 0.83 76.0 6.78e-01 100.0% 82.1%
3166485 101.1.2.616 ↗ alpha arrays › HTH › HTH › winged helix domain › PF27833 0.81 74.0 5.80e-01 100.0% 71.4%
3597393 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.81 72.0 5.58e-01 100.0% 51.3%
3216952 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.78 70.0 6.52e-01 100.0% 89.4%
4978321 101.1.2.57 ↗ alpha arrays › HTH › HTH › winged helix domain › EAP30 0.78 70.0 6.42e-01 100.0% 81.1%
3817137 101.1.2.57 ↗ alpha arrays › HTH › HTH › winged helix domain › EAP30 0.77 69.0 6.08e-01 100.0% 75.0%
5080644 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.76 67.0 6.58e-01 100.0% 94.7%
3608085 101.1.2.127 ↗ alpha arrays › HTH › HTH › winged helix domain › Cullin_Nedd8 0.75 66.0 5.95e-01 100.0% 71.3%
3314559 101.1.2.74 ↗ alpha arrays › HTH › HTH › winged helix domain › Cnd2 0.75 67.0 6.12e-01 100.0% 90.0%
3702650 101.1.2.127 ↗ alpha arrays › HTH › HTH › winged helix domain › Cullin_Nedd8 0.74 64.0 5.78e-01 100.0% 70.2%
4972260 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.73 63.0 5.74e-01 98.6% 77.9%
5071551 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.73 64.0 5.75e-01 98.6% 77.9%
3988923 101.1.2.158 ↗ alpha arrays › HTH › HTH › winged helix domain › DpnI_C 0.73 64.0 6.32e-01 100.0% 93.2%
3167826 101.1.2.466 ↗ alpha arrays › HTH › HTH › winged helix domain › WHD_MCM3_C 0.73 64.0 6.28e-01 100.0% 90.7%
3464534 101.1.2.641 ↗ alpha arrays › HTH › HTH › winged helix domain › eWH_GTF3C1, DUF7647 0.73 64.0 3.77e-01 100.0% 14.4%
4028240 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.73 65.0 5.86e-01 100.0% 84.2%
4986382 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.73 51.0 5.56e-01 100.0% 92.7%
4946048 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.73 65.0 6.23e-01 100.0% 86.3%
5069897 101.21.1.1 ↗ alpha arrays › HTH › HTH domain in DNA topoisomerase IV alpha subunit › HTH domain in DNA topoisomerase IV alpha subunit › TP6A_N 0.72 65.0 5.07e-01 100.0% 49.7%
3477053 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.72 63.0 6.07e-01 100.0% 93.8%
3573598 101.1.2.154 ↗ alpha arrays › HTH › HTH › winged helix domain › CDT1_C 0.71 64.0 5.46e-01 100.0% 63.6%
4027206 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.71 61.0 4.94e-01 100.0% 55.0%
4011084 101.1.2.288 ↗ alpha arrays › HTH › HTH › winged helix domain › Stk19 0.70 61.0 4.14e-01 100.0% 26.9%
2523328 101.1.2.94 ↗ alpha arrays › HTH › HTH › winged helix domain › ANAPC2 0.70 61.0 5.64e-01 100.0% 78.9%
3205448 101.1.2.288 ↗ alpha arrays › HTH › HTH › winged helix domain › Stk19 0.70 61.0 5.36e-01 100.0% 66.7%
4545670 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.69 61.0 5.43e-01 98.6% 75.8%
4026195 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.69 60.0 5.87e-01 100.0% 89.3%
3362715 101.1.2.386 ↗ alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.68 59.0 5.55e-01 98.6% 90.6%
4959557 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.68 50.0 4.98e-01 100.0% 77.1%
3499201 101.1.2.416 ↗ alpha arrays › HTH › HTH › winged helix domain › WH_Egal 0.68 59.0 5.00e-01 100.0% 57.5%
3905735 101.1.2.94 ↗ alpha arrays › HTH › HTH › winged helix domain › ANAPC2 0.67 57.0 5.44e-01 100.0% 82.4%
4955547 101.1.2.643 ↗ alpha arrays › HTH › HTH › winged helix domain › AAA_assoc_C 0.66 58.0 5.55e-01 98.6% 90.0%
3694234 101.1.2.57 ↗ alpha arrays › HTH › HTH › winged helix domain › EAP30 0.66 57.0 4.34e-01 100.0% 46.5%
3816427 101.1.2.386 ↗ alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.65 56.0 4.91e-01 98.6% 65.7%
3577481 101.1.2.416 ↗ alpha arrays › HTH › HTH › winged helix domain › WH_Egal 0.65 57.0 4.38e-01 100.0% 43.8%
3680378 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.65 57.0 5.09e-01 100.0% 89.0%
3256655 101.1.2.77 ↗ alpha arrays › HTH › HTH › winged helix domain › ESCRT-II 0.64 54.0 4.75e-01 100.0% 89.1%
3784212 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.61 53.0 4.70e-01 100.0% 71.4%
4011495 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.60 51.0 4.97e-01 100.0% 86.3%
4537424 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.60 50.0 4.61e-01 100.0% 75.8%
3591225 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.59 44.0 4.01e-01 88.4% 58.0%
3613617 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.58 48.0 4.67e-01 98.6% 91.4%
3908024 108.1.1.96 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_6, EF-hand_7 0.58 45.0 4.24e-01 87.0% 70.6%
3560469 108.1.1.98 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_5, EF-hand_7 0.57 43.0 3.86e-01 82.6% 67.3%
3934871 108.1.1.29 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_7 0.55 41.0 4.04e-01 81.2% 82.7%
3605896 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.55 42.0 3.63e-01 84.1% 66.1%
3969108 7579.1.1.0 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases 0.54 43.0 2.73e-01 94.2% 73.3%
4547515 145.1.1.2 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › Elongin_A 0.53 45.0 3.82e-01 100.0% 60.0%
3742671 4958.1.1.0 ↗ a+b complex topology › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit 0.52 45.0 3.66e-01 100.0% 73.6%
3676003 108.1.1.99 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5, EF-hand_6, EF-hand_7 0.52 40.0 3.25e-01 85.5% 49.3%
3272748 148.1.1.4 ↗ alpha arrays › Histone-like › Histone-related › Histone › CBFD_NFYB_HMF 0.51 44.0 3.51e-01 95.7% 80.7%
3451814 109.4.1.1258 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2 0.50 41.0 2.87e-01 95.7% 26.8%
D2 high residues 95-172
PDB
Domain cluster: representative
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2o0yB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 58.0 6.24e-01 100.0% 92.3%
3o2pE00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 54.0 5.23e-01 100.0% 79.1%
2od5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 59.0 5.66e-01 100.0% 84.6%
3elkA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 57.0 5.17e-01 100.0% 70.5%
2lh9A00 3.30.420.610 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › LOTUS domain-like 0.63 53.0 5.36e-01 100.0% 92.3%
1tbxB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 44.0 4.27e-01 100.0% 68.9%
3cuqA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 50.0 4.98e-01 100.0% 98.8%
2v1xA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 51.0 4.61e-01 100.0% 77.3%
6l2cB00 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.56 39.0 2.54e-01 97.4% 14.5%
2v1nA01 1.10.10.2030 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › DNA/RNA-binding protein Kin17, conserved domain 0.55 46.0 4.38e-01 100.0% 78.2%
4iv9A03 1.10.405.40 Mainly Alpha › Orthogonal Bundle › Guanine Nucleotide Dissociation Inhibitor; domain 1 › 0.55 48.0 3.94e-01 100.0% 75.2%
3lmmA03 3.30.565.60 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › 0.51 44.0 3.50e-01 100.0% 63.7%
1zcdA00 1.20.1530.10 Mainly Alpha › Up-down Bundle › Na+/H+ antiporter like fold › Na+/H+ antiporter like domain 0.50 42.0 2.80e-01 97.4% 71.3%
5cm2Z00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.50 42.0 3.34e-01 100.0% 48.9%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5046804 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.72 53.0 4.30e-01 100.0% 41.4%
3788392 101.1.2.535 ↗ alpha arrays › HTH › HTH › winged helix domain › PF25889 0.70 62.0 5.48e-01 100.0% 76.5%
4959073 101.1.2.271 ↗ alpha arrays › HTH › HTH › winged helix domain › B-block_TFIIIC 0.70 56.0 4.82e-01 100.0% 55.8%
3173552 101.1.2.535 ↗ alpha arrays › HTH › HTH › winged helix domain › PF25889 0.70 61.0 5.14e-01 100.0% 85.9%
3266668 101.1.2.69 ↗ alpha arrays › HTH › HTH › winged helix domain › La 0.65 56.0 5.21e-01 100.0% 75.0%
4938390 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.65 56.0 4.80e-01 100.0% 73.1%
3781173 101.1.2.73 ↗ alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc82 0.65 58.0 4.82e-01 100.0% 83.0%
4995959 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.64 53.0 4.78e-01 100.0% 65.5%
4981961 101.1.2.819 ↗ alpha arrays › HTH › HTH › winged helix domain › PF27231 0.63 55.0 4.35e-01 97.4% 62.5%
5071263 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.60 49.0 4.71e-01 100.0% 78.9%
5044327 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.60 50.0 4.63e-01 100.0% 73.0%
4928190 101.1.2.26 ↗ alpha arrays › HTH › HTH › winged helix domain › HxlR 0.59 46.0 4.53e-01 100.0% 78.6%
5081376 3696.1.1.0 ↗ a+b two layers › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related 0.57 33.0 3.45e-01 84.6% 62.9%
4929794 101.21.1.1 ↗ alpha arrays › HTH › HTH domain in DNA topoisomerase IV alpha subunit › HTH domain in DNA topoisomerase IV alpha subunit › TP6A_N 0.56 47.0 4.19e-01 98.7% 68.3%
5022297 242.1.1.7 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.51 43.0 4.08e-01 96.2% 91.6%
5056447 1.1.7.1 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Orn_DAP_Arg_deC 0.51 37.0 2.64e-01 76.9% 65.8%
4520635 371.1.1.1 ↗ few secondary structure elements › Phospholipase A2, PLA2 › Phospholipase A2, PLA2 › Phospholipase A2, PLA2 › Phospholip_A2_1 0.50 35.0 3.04e-01 73.1% 50.0%