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IMGVR_UViG_3300009715_000463-3300009715-Ga0116160_10178091

Arc-Vir

IMGVR_UViG_3300009715_000463-3300009715-Ga0116160_10178091

Identity

Kingdom:
archaea

Quality

70.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-52
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00565.24 best SNase 21.3 4.30e-04 94.1% 31.8%
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3bdlA02 2.40.50.90 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.75 64.0 4.45e-01 100.0% 31.2%
4v19R01 3.90.1030.10 Alpha Beta › Alpha-Beta Complex › 50s Ribosomal Protein L17; Chain: A, › Ribosomal protein L17 0.65 48.0 3.84e-01 84.3% 42.9%
1sqhA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.63 46.0 3.26e-01 80.4% 39.2%
6pfzD02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.60 49.0 3.22e-01 98.0% 34.2%
1fneA01 3.10.320.10 Alpha Beta › Roll › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 0.60 40.0 3.51e-01 70.6% 53.2%
1cx8A01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.60 51.0 3.21e-01 100.0% 51.1%
4ywzB00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.57 41.0 3.03e-01 78.4% 45.2%
2byfA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.57 40.0 3.30e-01 78.4% 88.8%
2l2nA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.57 44.0 4.07e-01 92.2% 93.0%
1whqA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.56 43.0 4.04e-01 94.1% 94.4%
1whnA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.55 44.0 3.76e-01 100.0% 75.2%
2l66A00 2.10.260.10 Mainly Beta › Ribbon › Pemi-like Protein 1; Chain: D › 0.54 40.0 4.00e-01 80.4% 86.8%
5ccbA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.54 42.0 2.99e-01 100.0% 89.0%
4dkkA02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.53 42.0 3.92e-01 100.0% 89.2%
3ks7A02 2.60.120.230 Mainly Beta › Sandwich › Jelly Rolls › 0.53 36.0 2.55e-01 72.5% 82.7%
1dq3A03 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.53 41.0 3.58e-01 90.2% 65.5%
3ntkB01 2.40.50.790 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.53 45.0 3.86e-01 100.0% 86.0%
1n08A00 2.40.30.30 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like 0.52 42.0 3.10e-01 94.1% 53.2%
3g3sA01 3.40.630.110 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › GNAT acetyltransferase-like 0.52 36.0 2.94e-01 78.4% 64.7%
3fcyA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.52 40.0 2.59e-01 96.1% 51.1%
2n3gA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.52 40.0 3.78e-01 100.0% 94.4%
3k1lA01 3.30.457.40 Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › 0.51 35.0 3.03e-01 72.5% 53.3%
5b08A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 34.0 2.84e-01 70.6% 68.0%
2wzpR02 3.55.50.50 Alpha Beta › 3-Layer(bab) Sandwich › Phage tail protein beta-alpha-beta fold › Phage tail base-plate attachment protein, domain D4 0.51 35.0 2.95e-01 76.5% 92.9%
3i1iB01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.50 42.0 2.58e-01 100.0% 14.8%
1v61A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 39.0 3.08e-01 96.1% 57.6%
3mtiB00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.50 41.0 2.95e-01 100.0% 95.0%
ECOD (45)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3218843 2.6.1.0 ↗ beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease 0.79 69.0 5.74e-01 100.0% 57.6%
3649895 2.6.1.1 ↗ beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase 0.78 67.0 5.62e-01 100.0% 57.1%
3921697 2.6.1.0 ↗ beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease 0.68 58.0 4.56e-01 100.0% 45.5%
4003137 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.67 47.0 3.23e-01 72.5% 50.7%
4024485 304.116.1.1 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in release factor › Ferredoxin-like domain in release factor › PCRF 0.65 47.0 3.66e-01 80.4% 98.3%
4117447 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.65 46.0 2.94e-01 76.5% 32.2%
5075144 101.1.9.16 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.64 46.0 4.06e-01 76.5% 52.0%
4013676 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.64 35.0 2.69e-01 100.0% 22.5%
3711992 218.3.1.0 ↗ a+b two layers › Enolase-N/ribosomal protein › Prokaryotic ribosomal protein L17 › Prokaryotic ribosomal protein L17 0.63 52.0 4.11e-01 100.0% 70.8%
5075421 267.1.1.3 ↗ a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase 0.62 41.0 2.70e-01 70.6% 40.8%
3845036 5001.1.1.3 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_2 0.61 43.0 2.69e-01 74.5% 34.0%
3173026 242.1.1.1 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 0.61 44.0 3.12e-01 80.4% 59.4%
4137393 330.1.1.4 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Rad52_Rad22 0.61 48.0 3.51e-01 90.2% 70.7%
4537756 330.1.1.25 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › PF26980 0.60 51.0 4.32e-01 92.2% 74.1%
3190947 2011.1.1.0 ↗ a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases 0.60 52.0 3.15e-01 100.0% 55.7%
3959332 323.1.1.3 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.60 42.0 2.61e-01 80.4% 12.2%
4022589 171.1.1.1 ↗ alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3 0.59 36.0 2.38e-01 98.0% 13.3%
3653274 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.58 49.0 4.28e-01 100.0% 81.2%
3605887 304.116.1.1 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in release factor › Ferredoxin-like domain in release factor › PCRF 0.58 39.0 2.96e-01 70.6% 95.2%
3517888 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.58 46.0 4.04e-01 100.0% 80.0%
4963925 3488.1.1.5 ↗ a+b three layers › Putative sensor histidine kinase domain › Putative sensor histidine kinase domain › Putative sensor histidine kinase domain › Cache_3-Cache_2 0.57 42.0 2.92e-01 80.4% 65.7%
4218481 1001.1.1.1 ↗ a+b two layers › Formate dehydrogenase/DMSO reductase, domain 1 › Formate dehydrogenase/DMSO reductase, domain 1 › Formate dehydrogenase/DMSO reductase, domain 1 › Molybdop_Fe4S4 0.57 40.0 3.74e-01 74.5% 95.4%
5048830 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.57 46.0 3.63e-01 98.0% 97.6%
3269253 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.56 42.0 3.34e-01 90.2% 37.4%
4890201 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.56 39.0 2.14e-01 72.5% 5.2%
4348096 3675.1.1.1 ↗ a+b complex topology › DNA gyrase subunit B insertion domain › DNA gyrase subunit B insertion domain › DNA gyrase subunit B insertion domain › GyrB_insert 0.56 45.0 3.28e-01 96.1% 55.2%
3278402 71.2.1.1 ↗ beta meanders › Lipoprotein localization factors LolAB › PA1994-like › PA1994-like › Glycolipid_bind 0.56 45.0 3.21e-01 98.0% 89.7%
3713148 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.55 46.0 3.77e-01 94.1% 78.9%
4938125 896.1.1.0 ↗ a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related 0.54 42.0 3.70e-01 90.2% 62.4%
3747930 6006.1.1.4 ↗ extended segments › Voltage gated calcium channel IQ domain › Voltage gated calcium channel IQ domain › Voltage gated calcium channel IQ domain › PF28678 0.54 36.0 3.21e-01 74.5% 43.8%
3572980 6006.1.1.4 ↗ extended segments › Voltage gated calcium channel IQ domain › Voltage gated calcium channel IQ domain › Voltage gated calcium channel IQ domain › PF28678 0.54 36.0 3.61e-01 74.5% 65.5%
4026794 2011.1.1.1 ↗ a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M14 0.54 36.0 2.19e-01 72.5% 12.6%
3742474 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.53 43.0 3.97e-01 100.0% 86.7%
3544618 4292.2.1.0 ↗ a+b two layers › FlaG-like › MAGUK binding stalk (MBS) domain › MAGUK binding stalk (MBS) domain 0.53 37.0 3.31e-01 78.4% 82.4%
4486890 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.53 37.0 3.07e-01 78.4% 57.3%
3656807 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.53 38.0 3.25e-01 80.4% 54.4%
3414623 101.1.2.566 ↗ alpha arrays › HTH › HTH › winged helix domain › CDT1, CDT1_C 0.52 36.0 2.35e-01 78.4% 14.2%
3491344 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.52 38.0 3.31e-01 80.4% 50.0%
4073606 3703.1.1.0 ↗ a/b three-layered sandwiches › HSP90 C-terminal a/b domain › HSP90 C-terminal a/b domain › HSP90 C-terminal a/b domain 0.52 36.0 2.47e-01 78.4% 47.4%
3625937 101.1.2.216 ↗ alpha arrays › HTH › HTH › winged helix domain › CED4_WHD 0.52 44.0 3.18e-01 98.0% 59.3%
3728856 171.1.1.9 ↗ alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3, Ribonucleas_3_3 0.52 45.0 2.95e-01 100.0% 62.7%
5009974 2487.1.1.9 ↗ a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › Cyclase 0.51 37.0 3.01e-01 78.4% 99.1%
3970718 3675.1.1.0 ↗ a+b complex topology › DNA gyrase subunit B insertion domain › DNA gyrase subunit B insertion domain › DNA gyrase subunit B insertion domain 0.51 40.0 2.95e-01 90.2% 53.3%
4186732 1001.1.1.0 ↗ a+b two layers › Formate dehydrogenase/DMSO reductase, domain 1 › Formate dehydrogenase/DMSO reductase, domain 1 › Formate dehydrogenase/DMSO reductase, domain 1 0.51 39.0 3.62e-01 88.2% 88.6%
3439448 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.50 36.0 2.39e-01 80.4% 54.9%