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IMGVR_UViG_3300009720_000060-3300009720-Ga0116159_10044434

Arc-Vir

IMGVR_UViG_3300009720_000060-3300009720-Ga0116159_10044434

Identity

Kingdom:
archaea

Quality

63.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 238-294
PDB
Domain cluster: representative
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2rovA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.71 60.0 4.87e-01 100.0% 94.0%
2rloA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.69 59.0 4.65e-01 100.0% 89.8%
2p39A00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.64 49.0 3.70e-01 84.2% 85.9%
4m1xD00 3.30.1360.240 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.63 45.0 4.20e-01 77.2% 90.3%
1wjrA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 48.0 3.83e-01 89.5% 80.3%
1g6zA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.60 47.0 4.44e-01 87.7% 88.6%
3ceyB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 46.0 3.54e-01 87.7% 67.4%
3hlzB01 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.56 42.0 3.21e-01 82.5% 40.0%
3ci0K01 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.53 37.0 3.07e-01 73.7% 48.1%
3zqsA02 3.10.110.20 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › RWD domain-like 0.53 40.0 3.40e-01 84.2% 69.4%
2vnuD04 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 40.0 3.70e-01 87.7% 79.7%
3f5rA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 42.0 3.55e-01 100.0% 78.8%
1s4uX00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 42.0 2.60e-01 100.0% 14.9%
4b1bA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 43.0 2.60e-01 94.7% 69.8%
4wsfA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 41.0 3.53e-01 100.0% 87.4%
2qm1B01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.51 41.0 3.19e-01 100.0% 91.4%
1bprA00 2.60.34.10 Mainly Beta › Sandwich › Substrate Binding Domain Of DNAk; Chain A, domain 1 › Substrate Binding Domain Of DNAk; Chain A, domain 1 0.51 36.0 2.66e-01 78.9% 53.2%
1xksA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.50 42.0 2.65e-01 100.0% 15.8%
ECOD (36)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3481415 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.73 63.0 5.01e-01 100.0% 79.8%
3479095 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.73 63.0 5.05e-01 100.0% 79.1%
3875067 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.71 61.0 4.42e-01 100.0% 54.1%
3991560 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.70 61.0 5.21e-01 100.0% 93.7%
3841924 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.70 60.0 4.91e-01 100.0% 81.8%
3765075 220.1.1.164 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PF26089 0.70 60.0 4.28e-01 100.0% 67.2%
3706577 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.70 61.0 4.70e-01 100.0% 94.6%
3756160 220.1.1.33 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_8 0.69 59.0 4.50e-01 100.0% 61.4%
3563663 220.1.1.33 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_8 0.69 60.0 5.03e-01 100.0% 89.0%
3500872 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.67 56.0 4.72e-01 100.0% 92.4%
3923930 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.66 57.0 4.66e-01 100.0% 80.0%
4497416 325.1.7.4 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › GCV_H 0.64 54.0 4.08e-01 96.5% 77.2%
5018514 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.63 54.0 4.16e-01 98.2% 96.3%
3460551 4.8.1.1 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo 0.62 46.0 4.45e-01 86.0% 75.7%
3893808 4.1.1.34 ↗ beta barrels › SH3 › SH3 › SH3 › MBT 0.60 50.0 3.19e-01 100.0% 33.1%
3649700 213.1.1.0 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.59 48.0 4.31e-01 94.7% 90.6%
3933292 4.8.1.1 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo 0.58 44.0 4.63e-01 84.2% 98.0%
3300848 4.1.1.38 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L2_C 0.57 39.0 3.29e-01 91.2% 38.8%
3515144 4.1.1.34 ↗ beta barrels › SH3 › SH3 › SH3 › MBT 0.56 44.0 3.41e-01 93.0% 74.0%
3239992 5.1.2.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.56 47.0 3.39e-01 100.0% 54.1%
4960839 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.55 42.0 3.58e-01 87.7% 64.0%
3412823 708.1.1.4 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FLYWCH 0.55 37.0 3.80e-01 71.9% 78.2%
3436743 5.1.3.67 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.54 45.0 2.88e-01 96.5% 20.9%
3653947 71.1.1.17 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › PF28435 0.54 46.0 3.34e-01 100.0% 80.6%
3937194 4.1.1.249 ↗ beta barrels › SH3 › SH3 › SH3 › KOW2_Spt5 0.54 42.0 4.06e-01 86.0% 80.0%
3999383 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.54 44.0 2.85e-01 100.0% 29.1%
3488078 5.1.12.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › PERK and Ire1 luminal domains 0.54 43.0 2.97e-01 98.2% 56.3%
4931870 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.53 40.0 2.78e-01 86.0% 55.3%
4887383 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.53 37.0 4.09e-01 91.2% 100.0%
3367314 5.1.4.510 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › FBA_1 0.52 45.0 2.92e-01 100.0% 26.7%
3340789 5.1.3.118 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.52 44.0 2.76e-01 100.0% 20.3%
4998357 2484.1.1.8 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › ROK 0.51 43.0 3.41e-01 100.0% 92.3%
3554713 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 43.0 2.59e-01 100.0% 17.8%
3627111 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.50 41.0 2.51e-01 96.5% 91.0%
4405336 206.1.3.21 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RimK 0.50 41.0 2.90e-01 100.0% 43.3%
None — 0.50 40.0 2.95e-01 100.0% 46.5%