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IMGVR_UViG_3300009761_000003-3300009761-Ga0116168_100059312
Arc-VirIMGVR_UViG_3300009761_000003-3300009761-Ga0116168_100059312
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 13-95
Domain cluster:
rep: IMGVR_UViG_2684622743_000001-2684622743-2685523762__D15-101
D2
high
residues 100-160
Domain cluster:
rep: IMGVR_UViG_3300029718_000421-3300029718-Ga0245237_100005116__D105-159
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1c5eA00 | 2.40.300.10 | Mainly Beta › Beta Barrel › Virus Head Decoration Protein; Chain: A, › Head decoration protein D | 0.78 | 69.0 | 5.97e-01 | 100.0% | 88.4% |
| 6xgqb01 | 2.40.300.10 | Mainly Beta › Beta Barrel › Virus Head Decoration Protein; Chain: A, › Head decoration protein D | 0.73 | 66.0 | 5.71e-01 | 100.0% | 91.4% |
| 3gqhA01 | 2.40.300.10 | Mainly Beta › Beta Barrel › Virus Head Decoration Protein; Chain: A, › Head decoration protein D | 0.65 | 57.0 | 4.52e-01 | 98.4% | 99.2% |
| 2gmlA01 | 3.30.70.580 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Pseudouridine synthase I, catalytic domain, N-terminal subdomain | 0.61 | 47.0 | 4.05e-01 | 96.7% | 52.0% |
| 2gk6A02 | 2.40.30.230 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.58 | 45.0 | 4.07e-01 | 98.4% | 61.4% |
| 1rz1A00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.57 | 49.0 | 3.76e-01 | 100.0% | 59.2% |
| 8ct0B01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.57 | 49.0 | 3.63e-01 | 100.0% | 56.6% |
| 2l8kA00 | 3.30.1330.220 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Arterivirus nonstructural protein 7 alpha | 0.56 | 37.0 | 3.05e-01 | 100.0% | 35.0% |
| 1x31A02 | 3.30.1360.120 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 | 0.56 | 47.0 | 2.89e-01 | 98.4% | 14.8% |
| 1i0rA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.56 | 47.0 | 3.56e-01 | 100.0% | 64.0% |
| 2lwyA00 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.53 | 36.0 | 2.91e-01 | 72.1% | 81.2% |
| 5jheA01 | 2.40.100.10 | Mainly Beta › Beta Barrel › Cyclophilin › Cyclophilin-like | 0.52 | 39.0 | 2.89e-01 | 88.5% | 91.5% |
| 3w1eA03 | 2.40.10.410 | Mainly Beta › Beta Barrel › Thrombin, subunit H › FlgT, C-terminal domain | 0.51 | 44.0 | 3.93e-01 | 98.4% | 68.5% |
ECOD (20)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2559744 | 70.4.1.2 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Phage_head_fibr | 0.82 | 68.0 | 6.97e-01 | 100.0% | 93.2% |
| 5083817 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.80 | 69.0 | 6.80e-01 | 93.4% | 100.0% |
| 5002645 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.80 | 71.0 | 7.22e-01 | 96.7% | 100.0% |
| 3981037 | 70.4.1.9 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Phage_cement_2 | 0.76 | 62.0 | 6.43e-01 | 95.1% | 100.0% |
| 3945288 | 70.4.1.7 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › XM1_gp53_minor_capsid | 0.73 | 64.0 | 4.88e-01 | 100.0% | 84.7% |
| 3387405 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.72 | 47.0 | 3.29e-01 | 96.7% | 21.6% |
| 3945811 | 70.4.1.7 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › XM1_gp53_minor_capsid | 0.71 | 60.0 | 6.09e-01 | 93.4% | 96.7% |
| 5083816 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.70 | 59.0 | 5.69e-01 | 98.4% | 98.6% |
| 2640772 | 70.4.1.1 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › HDPD | 0.69 | 60.0 | 5.16e-01 | 100.0% | 86.0% |
| 5039270 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.69 | 54.0 | 5.65e-01 | 93.4% | 98.2% |
| 3262455 | 1.1.7.90 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ZNFX1 | 0.57 | 51.0 | 4.34e-01 | 100.0% | 63.0% |
| 1823202 | 1.1.8.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GCV_T_C | 0.55 | 47.0 | 3.94e-01 | 98.4% | 54.7% |
| 1158411 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.55 | 38.0 | 3.28e-01 | 100.0% | 42.9% |
| 3949524 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.54 | 46.0 | 3.11e-01 | 96.7% | 26.8% |
| 3963042 | 304.102.1.0 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase | 0.54 | 46.0 | 3.12e-01 | 96.7% | 28.0% |
| 5016214 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.53 | 45.0 | 3.10e-01 | 96.7% | 27.3% |
| 3257020 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 37.0 | 3.13e-01 | 77.0% | 53.6% |
| 1866319 | 245.1.1.1 ↗ | a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C | 0.52 | 36.0 | 3.20e-01 | 75.4% | 48.4% |
| 4984458 | 7584.1.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › Rossmann-like domain in Acetyl-CoA synthetase-like proteins | 0.51 | 44.0 | 2.74e-01 | 100.0% | 28.1% |
| 5044414 | 12.3.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich | 0.50 | 37.0 | 2.59e-01 | 86.9% | 70.2% |