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IMGVR_UViG_3300009769_000737-3300009769-Ga0116184_1000162420

Arc-Vir

IMGVR_UViG_3300009769_000737-3300009769-Ga0116184_1000162420

Identity

Kingdom:
archaea

Quality

83.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 11-115
PDB
Domain cluster: rep: IMGVR_UViG_3300028635_000318-3300028635-Ga0302245_10026669__D20-110
D2 medium residues 137-257_393-406
PDB
Domain cluster: rep: NC_019521.1__YP_007006872.1__F405_gp039__00258__D18-134_163-187_253-270
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1x3zA04 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.67 23.0 3.56e-01 97.0% 75.9%
2bw2A01 3.10.20.420 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Bypass-of-forespore C, N-terminal domain 0.59 25.0 3.82e-01 88.1% 98.2%
1wx9A00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.54 30.0 3.68e-01 88.1% 86.0%
7arcC01 3.30.460.80 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › NADH:ubiquinone oxidoreductase Nqo5 subunit 0.51 26.0 2.67e-01 82.2% 47.4%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5037211 239.1.1.6 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › tRNA-synt_1c_C2 0.71 31.0 4.42e-01 85.9% 86.2%
5044393 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.62 20.0 2.94e-01 97.8% 60.0%
3453057 226.1.1.0 ↗ a+b two layers › POZ domain › POZ domain › POZ domain 0.58 25.0 2.79e-01 88.9% 49.1%
3940807 101.1.2.194 ↗ alpha arrays › HTH › HTH › winged helix domain › RIOX1_C_WH 0.52 23.0 2.28e-01 83.7% 37.1%
3777449 221.1.1.2 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ubiquitin 0.51 29.0 3.80e-01 89.6% 100.0%
D3 medium residues 326-389
PDB
Domain cluster: representative
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2mknA00 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.62 30.0 3.50e-01 95.3% 63.6%
1neiA00 3.30.160.220 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › YoaG 0.59 43.0 4.41e-01 85.9% 83.3%
3kxtA00 2.30.30.610 Mainly Beta › Roll › SH3 type barrels. › Chromatin protein Cren7 0.58 34.0 3.60e-01 84.4% 64.3%
1lwdA00 3.40.718.10 Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase 0.56 44.0 2.75e-01 90.6% 86.4%
1mhxA00 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.55 33.0 3.39e-01 98.4% 58.5%
3nroA00 3.40.630.190 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › LCP protein 0.55 48.0 3.29e-01 100.0% 95.3%
1ciaA00 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.54 45.0 3.25e-01 98.4% 34.7%
3pe5A00 3.40.630.190 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › LCP protein 0.54 46.0 3.11e-01 100.0% 89.5%
3g2bA00 1.10.10.1150 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Coenzyme PQQ synthesis protein D (PqqD) 0.52 29.0 2.60e-01 75.0% 35.6%
1l1lA01 3.20.70.20 Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › 0.52 43.0 2.57e-01 95.3% 17.0%
2gukA00 3.30.2190.10 Alpha Beta › 2-Layer Sandwich › PG1857-like › PG1857-like 0.51 33.0 2.84e-01 79.7% 36.9%
1k8kA04 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.51 35.0 3.23e-01 73.4% 62.0%
1t6eX01 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.51 42.0 3.19e-01 98.4% 87.4%
1vq8A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.50 30.0 2.87e-01 89.1% 46.2%
ECOD (11)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4002159 1073.1.1.1 ↗ alpha arrays › Mitochondrial calcium uniporter (MCU) › Mitochondrial calcium uniporter (MCU) › Mitochondrial calcium uniporter (MCU) › MCU 0.54 37.0 2.50e-01 98.4% 16.1%
5030944 1.1.3.0 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB 0.54 30.0 3.41e-01 71.9% 73.3%
2387818 101.46.1.1 ↗ alpha arrays › HTH › Parafibromin N-terminal domain › Parafibromin N-terminal domain › CDC73_N 0.52 40.0 3.43e-01 85.9% 78.4%
3955895 4232.1.1.1 ↗ few secondary structure elements › Ribosomal protein bL28-related › Ribosomal protein bL28-related › Ribosomal protein L28 › Ribosomal_L28 0.52 30.0 3.22e-01 92.2% 65.5%
3568382 2484.1.1.145 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1_7 0.51 41.0 2.66e-01 98.4% 58.2%
4323754 4232.1.1.1 ↗ few secondary structure elements › Ribosomal protein bL28-related › Ribosomal protein bL28-related › Ribosomal protein L28 › Ribosomal_L28 0.51 31.0 3.35e-01 85.9% 77.1%
3897370 3346.1.1.5 ↗ a+b two layers › N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 › N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 › N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 › ODR4-like 0.51 39.0 2.85e-01 87.5% 66.8%
3690527 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.51 39.0 3.51e-01 85.9% 87.4%
3380458 323.1.1.3 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.50 39.0 2.64e-01 89.1% 90.0%
3636918 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.50 39.0 2.72e-01 95.3% 24.4%
3239359 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.50 42.0 2.75e-01 96.9% 36.5%
D4 medium residues 420-528
PDB
Domain cluster: representative