Back to structures

IMGVR_UViG_3300009771_000005-3300009771-Ga0116155_1000038515

Arc-Vir

IMGVR_UViG_3300009771_000005-3300009771-Ga0116155_1000038515

Quality

78.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 12-64
PDB
Domain cluster: representative
CATH (51)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1f5aA02 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.67 53.0 3.83e-01 88.7% 69.2%
4hntA04 3.10.600.10 Alpha Beta › Roll › pyruvate carboxylase f1077a mutant fold › pyruvate carboxylase f1077a mutant domain 0.67 52.0 4.30e-01 88.7% 92.1%
3ajvC02 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.67 47.0 4.04e-01 100.0% 45.1%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.66 46.0 4.36e-01 94.3% 61.5%
3oa4A01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.64 48.0 3.70e-01 100.0% 33.8%
3rheA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.64 49.0 3.90e-01 100.0% 40.4%
4hc5D00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.64 50.0 3.86e-01 90.6% 75.6%
2p25A01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.63 47.0 3.76e-01 84.9% 84.0%
3nybA02 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.63 47.0 3.86e-01 86.8% 84.5%
3ossC00 2.30.30.830 Mainly Beta › Roll › SH3 type barrels. › 0.62 51.0 4.76e-01 90.6% 98.5%
3cz8A02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.62 47.0 4.69e-01 90.6% 100.0%
3d4eA01 3.30.1450.10 Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › 0.61 46.0 4.10e-01 86.8% 70.2%
1r7lA00 3.30.2120.10 Alpha Beta › 2-Layer Sandwich › Bacillus phage protein › Bacillus phage protein-like 0.61 48.0 3.98e-01 92.5% 78.6%
5b7gA00 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.59 43.0 2.83e-01 100.0% 16.5%
2r5vA01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.59 48.0 3.57e-01 96.2% 84.7%
2lkoA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 47.0 3.69e-01 100.0% 58.0%
1e88A03 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.58 34.0 3.75e-01 100.0% 73.8%
1aorA02 1.10.569.10 Mainly Alpha › Orthogonal Bundle › Aldehyde Ferredoxin Oxidoreductase Protein, subunit A; domain 2 › Aldehyde Ferredoxin Oxidoreductase Protein, subunit A, domain 2 0.58 50.0 3.47e-01 100.0% 37.6%
3eeiA00 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.58 40.0 2.72e-01 100.0% 17.3%
7jjtA01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.57 38.0 3.27e-01 90.6% 40.9%
4hbrA00 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 44.0 3.34e-01 100.0% 33.6%
2it1A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 40.0 3.88e-01 92.5% 67.2%
3j7yD01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 44.0 3.56e-01 92.5% 43.4%
2imzA00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.56 45.0 3.52e-01 100.0% 96.5%
2lc4A00 2.30.30.830 Mainly Beta › Roll › SH3 type barrels. › 0.56 49.0 3.87e-01 100.0% 59.5%
4g41A00 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.55 40.0 2.73e-01 90.6% 19.1%
1je0C00 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.54 42.0 2.80e-01 90.6% 20.3%
3o0wA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 37.0 2.48e-01 73.6% 44.0%
3htyA00 2.40.128.280 Mainly Beta › Beta Barrel › Lipocalin › 0.54 45.0 3.84e-01 100.0% 94.7%
3nm6B00 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.54 40.0 2.77e-01 90.6% 20.5%
3g1jA00 2.30.30.350 Mainly Beta › Roll › SH3 type barrels. › mobile metagenome of vibrio cholerae. Integron cassette protein vch_cass4. 0.53 46.0 3.92e-01 98.1% 75.6%
1s7iA00 3.30.70.1060 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Dimeric alpha+beta barrel 0.53 45.0 3.53e-01 100.0% 61.3%
4fd0A01 2.60.40.3630 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 40.0 3.65e-01 88.7% 91.1%
3fm2A00 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.53 41.0 3.34e-01 100.0% 63.9%
1txdA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 45.0 3.53e-01 100.0% 64.5%
6j8yC00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.52 41.0 2.78e-01 96.2% 81.6%
1l8rA00 3.10.260.20 Alpha Beta › Roll › Mlu1-box Binding Protein; DNA-binding Domain › Ski 0.52 37.0 3.16e-01 79.2% 63.4%
6c1zA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 43.0 3.34e-01 100.0% 81.9%
1ynjJ02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.52 35.0 3.38e-01 100.0% 59.7%
5zg8A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 36.0 3.08e-01 88.7% 40.2%
4uoiC00 3.30.160.890 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Hepatitis C virus envelope glycoprotein E1, chain C 0.52 37.0 3.83e-01 86.8% 82.4%
6u5vB07 3.30.1120.100 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.52 44.0 3.41e-01 100.0% 49.6%
2ixsA02 3.40.1350.80 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › BsuBI/PstI restriction endonuclease, C-terminal domain 0.52 42.0 3.12e-01 100.0% 44.4%
3w9kA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.51 39.0 3.01e-01 84.9% 45.2%
2mdrA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.51 42.0 3.59e-01 98.1% 64.9%
1m9sA04 2.30.30.170 Mainly Beta › Roll › SH3 type barrels. › 0.51 42.0 3.67e-01 96.2% 74.4%
1f2uB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 39.0 3.04e-01 92.5% 66.9%
2nysA00 2.30.30.220 Mainly Beta › Roll › SH3 type barrels. › SspB-like 0.51 42.0 3.41e-01 100.0% 70.1%
6ijfC01 3.90.1720.80 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › 0.51 35.0 3.11e-01 77.4% 95.7%
2kjpA01 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.51 36.0 3.27e-01 79.2% 69.6%
1sbxA00 3.10.260.20 Alpha Beta › Roll › Mlu1-box Binding Protein; DNA-binding Domain › Ski 0.50 35.0 2.98e-01 79.2% 58.5%
ECOD (57)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3585491 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.67 48.0 2.86e-01 100.0% 10.0%
4991268 7523.1.1.0 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II 0.65 53.0 3.82e-01 98.1% 81.1%
3655992 109.4.1.403 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Foie-gras_1 0.65 40.0 2.59e-01 75.5% 14.0%
4981101 2006.1.3.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain 0.64 46.0 3.48e-01 100.0% 30.4%
4644007 4.1.1.3 beta barrels › SH3 › SH3 › SH3 › KOW 0.63 47.0 4.57e-01 94.3% 72.9%
3405092 209.1.1.1 a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › Lectin_C 0.63 45.0 3.13e-01 75.5% 50.3%
3392485 2.1.1.2 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_L2 0.62 45.0 3.80e-01 88.7% 45.6%
3684918 6043.1.1.0 a+b two layers › yfeY-like › yfeY-like › yfeY-like 0.62 46.0 4.39e-01 90.6% 66.2%
4138563 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 45.0 4.31e-01 94.3% 66.2%
5058103 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 51.0 4.69e-01 98.1% 72.1%
5042614 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 45.0 4.16e-01 94.3% 61.4%
4941620 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 44.0 4.30e-01 94.3% 71.7%
3478003 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.60 46.0 3.67e-01 90.6% 40.9%
4354770 4.1.1.3 beta barrels › SH3 › SH3 › SH3 › KOW 0.59 48.0 4.45e-01 98.1% 70.0%
4289792 2.14.1.1 beta barrels › OB-fold › HupF/HypC-like › HupF/HypC-like › HupF_HypC 0.59 39.0 3.61e-01 86.8% 52.9%
3252808 1170.1.2.0 beta barrels › IL8-related › IL8-related › chemokine-related domain in glycoprotein L (gL) 0.59 43.0 3.98e-01 92.5% 61.4%
3702275 64.1.1.0 beta meanders › WW domain-like › WW domain › WW domain 0.58 40.0 4.00e-01 73.6% 92.7%
4052768 3675.1.1.0 a+b complex topology › DNA gyrase subunit B insertion domain › DNA gyrase subunit B insertion domain › DNA gyrase subunit B insertion domain 0.58 47.0 3.49e-01 94.3% 44.7%
3512851 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 48.0 3.66e-01 96.2% 65.2%
4467360 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.57 42.0 4.11e-01 94.3% 71.7%
4105274 2011.2.1.1 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › PNP_UDP_1 0.57 41.0 2.76e-01 100.0% 17.9%
4675814 2484.1.1.153 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF1744 0.57 44.0 2.62e-01 86.8% 37.3%
3981308 11.2.1.5 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › IcmF_C 0.56 44.0 3.78e-01 98.1% 99.0%
5044263 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 45.0 4.16e-01 90.6% 65.7%
5029655 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.56 46.0 4.48e-01 98.1% 81.7%
3956394 2011.2.1.1 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › PNP_UDP_1 0.56 39.0 2.60e-01 98.1% 15.7%
3925891 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 48.0 4.12e-01 100.0% 83.3%
3491188 149.1.1.0 alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 0.56 41.0 2.61e-01 86.8% 14.0%
4229131 2011.2.1.3 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › Pept_tRNA_hydro 0.55 44.0 3.08e-01 94.3% 30.3%
4621153 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.55 40.0 3.94e-01 94.3% 71.7%
4985746 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.55 43.0 3.45e-01 86.8% 79.0%
4337720 3454.1.1.2 beta barrels › GspC HR domain/PilP-like › GspC HR domain/PilP-like › GspC HR domain/PilP-like › T2SSC 0.55 41.0 3.90e-01 84.9% 100.0%
4024746 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.54 41.0 2.72e-01 84.9% 79.6%
3837740 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.54 43.0 3.80e-01 88.7% 82.5%
4938191 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 45.0 3.70e-01 98.1% 71.8%
4170380 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.54 41.0 3.49e-01 88.7% 70.0%
4484893 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.54 43.0 4.10e-01 98.1% 75.4%
4437811 2003.1.2.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.54 44.0 3.32e-01 100.0% 84.0%
3229011 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.54 45.0 3.39e-01 100.0% 84.8%
3315491 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 42.0 3.30e-01 98.1% 75.7%
4887360 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.53 35.0 3.41e-01 98.1% 60.0%
3234330 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.53 39.0 3.17e-01 83.0% 47.3%
4009761 3454.1.1.2 beta barrels › GspC HR domain/PilP-like › GspC HR domain/PilP-like › GspC HR domain/PilP-like › T2SSC 0.53 46.0 4.34e-01 100.0% 93.8%
3989890 4958.1.1.0 a+b complex topology › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit 0.52 43.0 4.06e-01 94.3% 89.2%
4136386 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.52 44.0 3.14e-01 98.1% 56.5%
3305101 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.52 43.0 3.19e-01 96.2% 70.0%
5077369 223.2.1.5 a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.52 40.0 3.22e-01 88.7% 86.7%
3584264 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.52 43.0 3.34e-01 96.2% 62.4%
3789602 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 43.0 3.34e-01 96.2% 62.4%
3735661 896.1.1.0 a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related 0.51 44.0 3.60e-01 100.0% 69.5%
5050157 223.2.1.12 a+b three layers › Profilin-like › profilin-like › profilin-like › MAPKK1_Int 0.51 39.0 2.89e-01 86.8% 62.7%
4025182 213.1.1.57 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › BCCIP 0.51 45.0 2.88e-01 100.0% 22.4%
3610835 206.1.3.4 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › mRNA_cap_enzyme 0.51 40.0 2.58e-01 92.5% 67.2%
5047395 2008.1.1.16 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Mrr_cat 0.51 38.0 3.17e-01 100.0% 42.7%
4430771 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.51 39.0 2.96e-01 90.6% 77.2%
3258814 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.50 41.0 3.46e-01 100.0% 63.8%
3641981 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.50 41.0 4.00e-01 98.1% 98.3%