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IMGVR_UViG_3300009771_000005-3300009771-Ga0116155_1000038526

Arc-Vir

IMGVR_UViG_3300009771_000005-3300009771-Ga0116155_1000038526

Identity

Kingdom:
archaea

Quality

66.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-60
PDB
Domain cluster: representative
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4rs8A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 47.0 4.06e-01 82.4% 94.0%
2qgmA02 3.30.1870.10 Alpha Beta › 2-Layer Sandwich › EreA/ChaN-like, small alpha-beta sandwich › EreA-like; domain 2 0.61 48.0 4.37e-01 90.2% 69.4%
5dukB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 40.0 3.75e-01 70.6% 79.1%
2ia0A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 42.0 4.16e-01 74.5% 100.0%
1ydxA02 1.10.287.1120 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Bipartite methylase S protein 0.59 43.0 3.58e-01 78.4% 60.0%
4h63H01 1.20.58.1710 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.58 40.0 3.61e-01 78.4% 51.4%
1w36C06 1.10.10.990 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.58 43.0 3.97e-01 86.3% 88.9%
4bl7B02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.57 38.0 3.04e-01 70.6% 46.7%
3kavA00 1.20.1270.360 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.56 40.0 3.24e-01 76.5% 40.2%
2lhrA00 1.20.58.1270 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.56 48.0 4.24e-01 100.0% 73.1%
3fhnA05 1.10.10.2270 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Dsl1p vesicle tethering complex, Tip20p subunit, domain E 0.56 42.0 3.91e-01 84.3% 97.0%
2ocgA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.54 44.0 2.88e-01 96.1% 71.3%
1bw5A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.54 39.0 3.62e-01 78.4% 66.7%
2b9sA02 1.10.10.41 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Yeast DNA topoisomerase - domain 1 0.52 41.0 3.64e-01 98.0% 81.6%
5w6lA01 3.40.50.11550 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.52 39.0 2.60e-01 82.4% 19.4%
3tadC02 1.10.150.50 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 0.51 40.0 3.29e-01 90.2% 48.0%
2xz2A00 1.20.960.50 Mainly Alpha › Up-down Bundle › Mitochondrial Import Receptor Subunit Tom20; Chain A › Cleavage stimulation factor subunit 1, dimerisation domain 0.50 37.0 3.55e-01 86.3% 75.8%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3596744 5086.1.1.0 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.62 49.0 4.18e-01 88.2% 68.2%
5079731 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.61 43.0 3.89e-01 74.5% 80.0%
4990677 101.1.2.14 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.61 42.0 3.55e-01 72.5% 91.8%
3299872 5063.1.1.3 ↗ alpha bundles › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › NADH-u_ox-rdase 0.61 43.0 3.68e-01 76.5% 52.9%
4956290 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.57 41.0 3.84e-01 76.5% 86.2%
5075437 101.1.2.140 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_AsnC-type 0.57 40.0 3.66e-01 74.5% 78.6%
4998813 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.57 43.0 4.20e-01 82.4% 98.2%
5048567 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.57 42.0 3.92e-01 80.4% 84.6%
3166850 101.1.1.3 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding 0.56 42.0 3.42e-01 84.3% 41.8%
5028998 101.1.2.140 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_AsnC-type 0.56 40.0 3.95e-01 74.5% 100.0%
3357448 192.6.1.0 ↗ alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain 0.56 38.0 3.90e-01 74.5% 80.0%
5028152 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.55 39.0 3.69e-01 78.4% 80.0%
4978144 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.55 43.0 4.15e-01 96.1% 100.0%
5047083 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.54 39.0 3.58e-01 82.4% 81.3%
5029950 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.52 40.0 3.97e-01 86.3% 90.9%
4968035 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.52 40.0 3.32e-01 86.3% 96.9%
5041922 101.1.2.55 ↗ alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB 0.52 38.0 3.42e-01 82.4% 100.0%
4966151 101.1.2.140 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_AsnC-type 0.52 41.0 3.81e-01 100.0% 78.7%
3585384 101.1.2.199 ↗ alpha arrays › HTH › HTH › winged helix domain › FAN1_HTH 0.51 40.0 2.96e-01 100.0% 65.0%
3629946 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 41.0 2.66e-01 92.2% 20.0%
3244091 102.1.1.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.51 39.0 3.54e-01 92.2% 61.3%
3970092 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.50 34.0 3.26e-01 72.5% 78.5%