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IMGVR_UViG_3300009790_003189-3300009790-Ga0115012_100058831

Arc-Vir

IMGVR_UViG_3300009790_003189-3300009790-Ga0115012_100058831

Identity

Kingdom:
archaea

Quality

87.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-56
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05100.18 best Phage_tail_L 29.3 7.20e-07 100.0% 19.9%
D2 medium residues 57-76_143-218
PDB
Domain cluster: representative
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5026481 64.3.1.3 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12_2 0.83 43.0 6.05e-01 83.3% 100.0%
4110715 64.3.1.1 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.82 47.0 5.93e-01 75.0% 93.2%
3972100 64.3.1.0 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain 0.77 44.0 5.34e-01 79.2% 84.6%
3971347 64.3.1.1 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.77 46.0 5.92e-01 77.1% 100.0%
4009012 64.3.1.0 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain 0.65 41.0 4.92e-01 80.2% 95.3%
2736861 64.3.1.1 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.63 39.0 4.59e-01 76.0% 91.0%
D3 medium residues 77-142_219-229
PDB
Domain cluster: rep: ON453897.1__WAK79190.1__X__00085__D752-819
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1goiB03 2.10.10.20 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › Carbohydrate-binding module superfamily 5/12 0.85 52.0 6.32e-01 85.7% 94.1%
1wxrA03 3.30.160.280 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.61 54.0 5.47e-01 97.4% 97.4%
1dm9A00 3.10.290.10 Alpha Beta › Roll › Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A › RNA-binding S4 domain 0.59 40.0 3.64e-01 74.0% 51.9%
4hizA01 3.30.750.60 Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › Endosialidase, N-terminal extension domain 0.57 30.0 3.70e-01 83.1% 90.5%
1nxzA01 2.40.240.20 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 0.57 40.0 4.14e-01 74.0% 93.1%
1peaA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.56 44.0 3.34e-01 84.4% 84.1%
4r0mB01 3.40.50.12780 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain 0.55 41.0 2.66e-01 83.1% 51.6%
3kw2A01 2.40.240.20 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 0.55 39.0 4.12e-01 74.0% 92.6%
1xa6A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.54 47.0 4.26e-01 96.1% 76.0%
3h5kA01 3.40.420.10 Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 0.53 39.0 2.99e-01 77.9% 58.8%
1nioA01 3.40.420.10 Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 0.53 39.0 3.05e-01 77.9% 59.3%
6pxcA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.53 44.0 4.05e-01 93.5% 78.8%
3wknF00 6.20.50.120 Special › Other non-globular › N-terminal domain of TfIIb › 0.53 27.0 3.21e-01 72.7% 76.1%
1rpyB00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.53 44.0 4.26e-01 92.2% 87.2%
1zj8A03 3.30.413.10 Alpha Beta › 2-Layer Sandwich › Sulfite Reductase Hemoprotein; domain 1 › Sulfite Reductase Hemoprotein, domain 1 0.51 41.0 3.31e-01 92.2% 59.4%
4nqrA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.51 39.0 3.19e-01 85.7% 91.0%
1boqA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.51 36.0 3.36e-01 79.2% 100.0%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4233290 64.3.1.0 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain 0.82 51.0 6.20e-01 79.2% 98.0%
3032323 64.3.1.0 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain 0.65 54.0 4.67e-01 89.6% 75.4%
6217 221.1.2.5 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4 0.59 40.0 3.64e-01 74.0% 51.9%
4340002 1.1.9.20 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_4 0.58 41.0 4.33e-01 74.0% 95.7%
3404119 2007.1.2.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I 0.55 46.0 3.44e-01 94.8% 98.5%
3247002 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.55 47.0 4.14e-01 93.5% 85.5%
3762791 913.1.1.9 ↗ few secondary structure elements › Hormone receptor domain (HRM, Pfam 02793) › Hormone receptor domain (HRM, Pfam 02793) › Hormone receptor domain (HRM, Pfam 02793) › PF27521 0.54 32.0 3.77e-01 79.2% 97.8%
3823490 2007.1.2.4 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor 0.54 47.0 3.57e-01 97.4% 93.5%
4946076 325.1.7.2 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RNA_pol_Rpb2_6 0.52 37.0 3.21e-01 76.6% 75.2%
3873058 2007.1.2.4 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor 0.52 44.0 3.33e-01 94.8% 94.2%
5063642 1.1.9.1 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA 0.51 40.0 3.78e-01 89.6% 95.0%
4662659 304.158.1.2 ↗ a+b two layers › Alpha-beta plaits › CRISPR system Cas5 homologs › CRISPR system Cas5 homologs › Cas_Cas5d 0.51 37.0 2.79e-01 81.8% 92.0%
4324527 5.1.5.213 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › PF29037 0.50 42.0 2.68e-01 94.8% 60.0%