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IMGVR_UViG_3300009838_000142-3300009838-Ga0116153_100024334
Arc-VirIMGVR_UViG_3300009838_000142-3300009838-Ga0116153_100024334
Identity
- Kingdom:
- archaea
Quality
88.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-45
Domain cluster:
representative
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3m7nA03 | 2.20.70.10 | Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › | 0.71 | 50.0 | 5.39e-01 | 83.7% | 97.1% |
| 7zj3D01 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.69 | 51.0 | 4.20e-01 | 81.4% | 49.4% |
| 2nutB02 | 2.30.30.380 | Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 | 0.65 | 51.0 | 4.62e-01 | 90.7% | 66.1% |
| 1m2vB03 | 2.30.30.380 | Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 | 0.65 | 51.0 | 4.61e-01 | 90.7% | 62.9% |
| 2pziB02 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.64 | 47.0 | 3.35e-01 | 93.0% | 24.8% |
| 2nutA02 | 2.30.30.380 | Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 | 0.64 | 50.0 | 4.56e-01 | 90.7% | 70.5% |
| 2xzm901 | 6.20.50.180 | Special › Other non-globular › N-terminal domain of TfIIb › | 0.63 | 48.0 | 4.08e-01 | 86.0% | 50.0% |
| 2jn4A00 | 2.40.50.240 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › NifT/FixU-like | 0.59 | 47.0 | 4.28e-01 | 100.0% | 81.8% |
| 8gq6A01 | 2.120.10.80 | Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller | 0.59 | 42.0 | 2.64e-01 | 81.4% | 98.7% |
| 2y69F00 | 2.60.11.10 | Mainly Beta › Sandwich › Cytochrome C Oxidase; Chain F › Cytochrome c oxidase, subunit Vb | 0.58 | 47.0 | 3.85e-01 | 100.0% | 50.5% |
| 1nh8A01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.57 | 46.0 | 3.58e-01 | 97.7% | 41.3% |
| 6rxpA02 | 3.30.1600.10 | Alpha Beta › 2-Layer Sandwich › SIR2/SIRT2 'Small Domain' › SIR2/SIRT2 'Small Domain' | 0.55 | 43.0 | 3.61e-01 | 100.0% | 64.2% |
| 2y8nB01 | 2.20.70.100 | Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › | 0.55 | 42.0 | 4.24e-01 | 95.3% | 85.7% |
| 1m2gA02 | 3.30.1600.10 | Alpha Beta › 2-Layer Sandwich › SIR2/SIRT2 'Small Domain' › SIR2/SIRT2 'Small Domain' | 0.54 | 44.0 | 3.61e-01 | 100.0% | 67.7% |
| 4qycB02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 40.0 | 3.31e-01 | 93.0% | 100.0% |
| 2ysiA01 | 2.20.70.10 | Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › | 0.54 | 38.0 | 4.05e-01 | 86.0% | 97.0% |
| 5aj3Q00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.53 | 41.0 | 3.25e-01 | 95.3% | 67.9% |
| 7mxdX01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 39.0 | 3.12e-01 | 100.0% | 99.2% |
ECOD (60)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5029687 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.92 | 72.0 | 7.15e-01 | 83.7% | 88.9% |
| 3784601 | 376.1.6.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain › IBR | 0.88 | 67.0 | 6.62e-01 | 81.4% | 82.2% |
| 3739700 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.86 | 57.0 | 6.32e-01 | 72.1% | 100.0% |
| 3786601 | 375.1.1.200 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-LSD1 | 0.85 | 63.0 | 6.77e-01 | 81.4% | 97.1% |
| 3903614 | 375.1.3.2 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Hypothetical protein MTH1184 › MRNIP | 0.82 | 62.0 | 5.43e-01 | 83.7% | 55.4% |
| 5002125 | 375.1.3.3 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Hypothetical protein MTH1184 › DUF5817 | 0.81 | 63.0 | 5.66e-01 | 86.0% | 66.7% |
| 5036396 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.80 | 61.0 | 6.37e-01 | 83.7% | 92.3% |
| 3380132 | 375.1.1.200 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-LSD1 | 0.80 | 62.0 | 6.33e-01 | 86.0% | 92.5% |
| 3846046 | 221.1.1.195 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › VCIP135_N | 0.79 | 64.0 | 5.54e-01 | 88.4% | 66.2% |
| 4475754 | 4076.2.1.5 ↗ | a+b two layers › L9 N-domain-like › MbtH-like › MbtH-like › MRNIP | 0.79 | 62.0 | 5.39e-01 | 86.0% | 56.9% |
| 4263982 | 375.1.1.302 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › MRNIP | 0.79 | 61.0 | 5.69e-01 | 86.0% | 67.3% |
| 3577912 | 375.1.1.202 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Tmemb_55A | 0.79 | 60.0 | 5.72e-01 | 83.7% | 72.0% |
| 4981580 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.79 | 60.0 | 6.00e-01 | 83.7% | 81.8% |
| 3741002 | 192.29.1.117 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › Ima1_N | 0.78 | 58.0 | 6.10e-01 | 81.4% | 100.0% |
| 3656347 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.78 | 56.0 | 5.90e-01 | 79.1% | 97.1% |
| 3498209 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.78 | 58.0 | 5.11e-01 | 88.4% | 54.7% |
| 3893608 | 376.1.6.2 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain › IBR_1 | 0.78 | 60.0 | 5.20e-01 | 90.7% | 54.4% |
| 5037997 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.78 | 61.0 | 6.30e-01 | 88.4% | 95.0% |
| 3213738 | 192.29.1.117 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › Ima1_N | 0.76 | 55.0 | 5.93e-01 | 79.1% | 97.1% |
| 5040368 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.76 | 56.0 | 5.99e-01 | 81.4% | 100.0% |
| 3592749 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.75 | 59.0 | 5.86e-01 | 88.4% | 82.2% |
| 5066735 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.75 | 57.0 | 5.51e-01 | 86.0% | 76.0% |
| 3251948 | 375.1.3.2 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Hypothetical protein MTH1184 › MRNIP | 0.75 | 58.0 | 5.21e-01 | 86.0% | 61.7% |
| 3878932 | 376.1.4.2 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Ariadne-1 protein homolog › IBR_1 | 0.75 | 57.0 | 5.19e-01 | 90.7% | 61.7% |
| 3274032 | 375.1.1.211 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Ima1_N | 0.75 | 56.0 | 5.55e-01 | 81.4% | 77.8% |
| 4111189 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.75 | 59.0 | 5.31e-01 | 90.7% | 63.3% |
| 3909223 | 376.1.6.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain › IBR | 0.75 | 61.0 | 5.35e-01 | 93.0% | 64.6% |
| 3271858 | 376.1.6.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain › IBR | 0.74 | 58.0 | 5.11e-01 | 88.4% | 61.5% |
| 5027043 | 375.1.1.12 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Ribosomal_S27e | 0.74 | 55.0 | 5.46e-01 | 81.4% | 95.6% |
| 3922469 | 604.1.1.200 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Ima1_N | 0.74 | 55.0 | 5.08e-01 | 81.4% | 63.6% |
| 3862499 | 192.29.1.117 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › Ima1_N | 0.74 | 55.0 | 5.07e-01 | 81.4% | 63.6% |
| 5016027 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.73 | 62.0 | 4.96e-01 | 100.0% | 55.6% |
| 3995440 | 375.1.1.211 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Ima1_N | 0.71 | 52.0 | 5.45e-01 | 79.1% | 97.1% |
| 3629733 | 375.1.1.211 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Ima1_N | 0.71 | 52.0 | 4.87e-01 | 81.4% | 63.6% |
| 5015586 | 375.1.1.19 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD | 0.70 | 51.0 | 4.94e-01 | 90.7% | 70.0% |
| 5067854 | 101.1.2.22 ↗ | alpha arrays › HTH › HTH › winged helix domain › PCI | 0.69 | 52.0 | 3.74e-01 | 90.7% | 27.7% |
| 4979574 | 2484.1.1.302 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB | 0.69 | 59.0 | 3.91e-01 | 97.7% | 80.6% |
| 4978165 | 2484.1.1.124 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › OrfB_IS605 | 0.69 | 59.0 | 3.76e-01 | 97.7% | 80.0% |
| 4173456 | 2484.1.1.211 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › OrfB_IS605, Cas12f1-like_TNB | 0.68 | 60.0 | 3.82e-01 | 97.7% | 83.6% |
| 3587862 | 2484.1.1.211 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › OrfB_IS605, Cas12f1-like_TNB | 0.68 | 58.0 | 3.74e-01 | 97.7% | 85.0% |
| 5022494 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.68 | 56.0 | 4.43e-01 | 100.0% | 49.0% |
| 5005094 | 2484.1.1.124 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › OrfB_IS605 | 0.67 | 57.0 | 3.68e-01 | 97.7% | 81.0% |
| 5051266 | 2484.1.1.302 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB | 0.67 | 56.0 | 3.54e-01 | 97.7% | 71.6% |
| 4979486 | 2484.1.1.302 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB | 0.66 | 56.0 | 3.74e-01 | 97.7% | 80.0% |
| 3857437 | 375.1.1.184 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_TOP3B | 0.66 | 49.0 | 5.02e-01 | 81.4% | 87.5% |
| 3484821 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.66 | 44.0 | 3.96e-01 | 72.1% | 75.4% |
| 5034313 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.65 | 47.0 | 4.82e-01 | 81.4% | 100.0% |
| 3742502 | 375.1.1.30 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-Sec23_Sec24 | 0.62 | 49.0 | 3.94e-01 | 90.7% | 51.1% |
| 3189994 | 375.1.1.19 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD | 0.60 | 48.0 | 3.92e-01 | 93.0% | 45.6% |
| 394809 | 376.1.3.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD | 0.60 | 43.0 | 3.83e-01 | 83.7% | 77.8% |
| 4163860 | 375.1.1.199 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › MJ0401 | 0.58 | 45.0 | 4.48e-01 | 90.7% | 95.6% |
| 5071927 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.58 | 42.0 | 3.92e-01 | 79.1% | 69.1% |
| 3784201 | 375.1.1.30 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-Sec23_Sec24 | 0.58 | 48.0 | 3.78e-01 | 100.0% | 44.0% |
| 3999619 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.58 | 40.0 | 3.85e-01 | 79.1% | 64.0% |
| 3208203 | 375.1.1.19 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD | 0.57 | 43.0 | 4.10e-01 | 90.7% | 69.1% |
| 3689321 | 376.1.3.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD | 0.56 | 38.0 | 3.34e-01 | 72.1% | 57.1% |
| 3486241 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.55 | 42.0 | 3.86e-01 | 86.0% | 78.3% |
| 3400851 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.54 | 43.0 | 4.35e-01 | 97.7% | 93.3% |
| 223929 | 3618.1.1.2 ↗ | beta complex topology › Flagellin beta sheet domain › Flagellin beta sheet domain › Flagellin beta sheet domain › FliC-like_3rd | 0.53 | 37.0 | 3.25e-01 | 74.4% | 44.8% |
| 3485123 | 389.6.1.0 ↗ | few secondary structure elements › EGF-like › Growth factor receptor domain › Growth factor receptor domain | 0.50 | 34.0 | 2.68e-01 | 90.7% | 29.5% |