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IMGVR_UViG_3300010155_001957-3300010155-Ga0098047_100028572

Arc-Vir

Identity

Accession:: IMGVR_UViG_3300010155_001957-3300010155-Ga0098047_100028572 ↗
Kingdom:: archaea

Quality

93.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 63-296

PDB

Domain cluster: rep: IMGVR_UViG_3300000154_000022-3300000154-SI47jul10_150mDRAFT_100054520__D5-242

CATH (47)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
6bmaA00	3.20.20.70	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I	0.72	51.0	4.94e-01	100.0%	64.5%
1qnrA00	3.20.20.80	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases	0.70	65.0	5.69e-01	100.0%	87.8%
4f8xA00	3.20.20.80	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases	0.68	64.0	5.64e-01	100.0%	77.0%
2uvaG04	3.20.20.70	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I	0.68	54.0	5.05e-01	100.0%	67.1%
3s6dA00	3.20.20.70	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I	0.68	57.0	5.43e-01	94.4%	76.3%
6n2aB02	3.20.20.10	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Alanine racemase	0.67	54.0	5.42e-01	99.6%	82.8%
2ftpA00	3.20.20.70	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I	0.67	55.0	5.07e-01	100.0%	67.3%
1fobA00	3.20.20.80	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases	0.67	62.0	5.50e-01	100.0%	81.4%
3oyzA01	3.20.20.60	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphoenolpyruvate-binding domains	0.66	60.0	5.70e-01	100.0%	83.6%
4gieA00	3.20.20.100	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › NADP-dependent oxidoreductase domain	0.66	51.0	4.76e-01	100.0%	65.3%
1sfjB00	3.20.20.70	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I	0.65	57.0	5.74e-01	100.0%	92.7%
3qfeB00	3.20.20.70	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I	0.65	50.0	4.55e-01	87.6%	61.3%
1aa1B02	3.20.20.110	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Ribulose bisphosphate carboxylase, large subunit, C-terminal domain	0.64	54.0	4.89e-01	100.0%	66.2%
3pfmA00	3.20.20.450	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain	0.64	47.0	4.67e-01	80.3%	71.2%
5jx5A00	3.20.20.40	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › 1, 4-beta cellobiohydrolase	0.64	60.0	5.33e-01	100.0%	83.9%
1jcmP00	3.20.20.70	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I	0.63	50.0	4.83e-01	100.0%	73.7%
3paoB00	3.20.20.140	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases	0.62	54.0	4.90e-01	91.9%	79.6%
2hmcA00	3.20.20.70	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I	0.62	58.0	5.23e-01	99.6%	78.7%
2r8wA00	3.20.20.70	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I	0.62	56.0	5.12e-01	100.0%	75.1%
7pd2B01	3.20.20.70	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I	0.61	57.0	4.90e-01	99.6%	73.9%
3zssA03	3.20.20.80	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases	0.61	57.0	4.86e-01	100.0%	80.9%
4l6dA00	3.20.20.140	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases	0.61	54.0	4.77e-01	97.9%	66.0%
2wvsA01	3.20.20.80	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases	0.60	56.0	4.99e-01	100.0%	76.3%
6ki3A01	3.20.20.150	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes	0.60	56.0	5.16e-01	99.6%	79.3%
5c54G00	3.20.20.70	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I	0.60	57.0	5.17e-01	100.0%	77.2%
3s83A00	3.20.20.450	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain	0.60	49.0	4.79e-01	97.0%	78.1%
1fdyB00	3.20.20.70	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I	0.59	55.0	5.09e-01	99.6%	82.8%
3cprA00	3.20.20.70	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I	0.59	55.0	5.03e-01	100.0%	81.1%
8fumD01	3.20.20.140	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases	0.58	54.0	4.72e-01	100.0%	91.7%
2r6oA00	3.20.20.450	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain	0.58	50.0	4.88e-01	100.0%	82.9%
7xyrA01	3.20.20.80	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases	0.58	52.0	5.02e-01	99.6%	85.4%
3lgdA00	3.20.20.140	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases	0.58	54.0	4.21e-01	100.0%	77.2%
3k8kA02	3.20.20.80	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases	0.58	53.0	4.62e-01	99.6%	67.6%
3hv8A00	3.20.20.450	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain	0.57	49.0	4.92e-01	97.0%	87.6%
6hq7B02	3.20.20.450	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain	0.57	50.0	4.87e-01	100.0%	84.2%
2pueA03	3.40.50.2300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator	0.57	33.0	4.02e-01	97.9%	88.4%
3gpgA00	3.40.220.10	Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1	0.56	37.0	4.33e-01	94.4%	93.8%
3bc9A02	3.20.20.80	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases	0.56	52.0	4.78e-01	98.7%	81.3%
4hu4A00	3.20.20.450	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain	0.56	47.0	4.68e-01	97.0%	84.2%
1w5dA02	3.50.80.20	Alpha Beta › 3-Layer(bba) Sandwich › D-tyrosyl-trna(Tyr) Deacylase; Chain: A; › D-Ala-D-Ala carboxypeptidase C, peptidase S13	0.56	24.0	3.43e-01	96.2%	86.3%
4k36B00	3.20.20.70	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I	0.54	48.0	4.21e-01	96.6%	98.9%
1ivnA00	3.40.50.1110	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase	0.54	39.0	4.42e-01	97.4%	97.2%
3a1fA00	3.40.50.80	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module	0.54	37.0	4.28e-01	97.9%	98.8%
4q6jB00	3.20.20.450	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain	0.53	46.0	4.52e-01	97.0%	87.0%
2qm0A01	3.40.50.1820	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain	0.52	43.0	4.23e-01	98.3%	81.6%
3gfzB02	3.20.20.450	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain	0.51	46.0	4.48e-01	97.9%	89.4%
2a4kB01	3.40.50.720	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain	0.51	39.0	4.28e-01	96.2%	95.9%

ECOD (28)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4997013	2002.1.1.73 ↗	a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › TGT	0.77	62.0	5.65e-01	100.0%	65.8%
3248829	2002.1.1.32 ↗	a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Oxidored_FMN	0.70	66.0	5.40e-01	100.0%	71.9%
4881894	2002.1.1.0 ↗	a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels	0.69	53.0	5.32e-01	100.0%	76.9%
4629529	2002.1.1.420 ↗	a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › HpcH_HpaI, PF25918	0.66	60.0	4.86e-01	100.0%	53.1%
4961538	2002.1.1.256 ↗	a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › MSH_C	0.66	59.0	4.80e-01	99.6%	51.6%
3211998	2002.1.1.41 ↗	a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › A_deaminase	0.66	53.0	4.62e-01	100.0%	56.6%
996606	2002.1.1.0 ↗	a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels	0.66	59.0	5.60e-01	100.0%	79.9%
1414285	2002.1.1.256 ↗	a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › MSH_C	0.66	60.0	5.60e-01	100.0%	80.0%
4941942	2002.1.1.0 ↗	a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels	0.66	56.0	5.10e-01	100.0%	69.1%
5070450	2002.1.1.13 ↗	a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Aldo_ket_red	0.65	55.0	4.96e-01	100.0%	65.0%
3962473	2002.1.1.0 ↗	a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels	0.65	61.0	5.43e-01	100.0%	74.2%
4020484	2002.1.1.134 ↗	a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Amidohydro_2	0.63	58.0	5.06e-01	97.9%	81.4%
None	—		0.63	54.0	4.72e-01	90.6%	74.3%
4014969	2002.1.1.0 ↗	a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels	0.62	58.0	5.31e-01	100.0%	83.7%
3976841	2002.1.1.4 ↗	a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Alpha-amylase	0.62	57.0	4.74e-01	99.6%	81.5%
1111393	2002.1.1.134 ↗	a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Amidohydro_2	0.61	54.0	4.77e-01	97.9%	66.0%
2527970	2002.1.1.29 ↗	a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DHDPS	0.61	57.0	5.19e-01	100.0%	78.4%
2538881	2002.5.1.1 ↗	a/b barrels › TIM beta/alpha-barrel › EAL domain › EAL domain › EAL	0.60	50.0	5.05e-01	100.0%	85.7%
4023424	2002.1.1.0 ↗	a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels	0.60	56.0	4.33e-01	100.0%	82.0%
4045382	2002.1.1.29 ↗	a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DHDPS	0.60	54.0	4.98e-01	100.0%	75.3%
3982385	2002.5.1.1 ↗	a/b barrels › TIM beta/alpha-barrel › EAL domain › EAL domain › EAL	0.57	49.0	4.74e-01	100.0%	82.3%
3966569	2002.5.1.0 ↗	a/b barrels › TIM beta/alpha-barrel › EAL domain › EAL domain	0.57	50.0	4.95e-01	97.0%	89.0%
3265952	207.1.1.0 ↗	beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats	0.55	49.0	4.03e-01	97.0%	63.6%
None	—		0.52	43.0	4.16e-01	98.3%	77.9%
3744604	2003.1.1.8 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › G6PD_N	0.51	37.0	4.15e-01	85.0%	98.3%
4008577	2002.5.1.1 ↗	a/b barrels › TIM beta/alpha-barrel › EAL domain › EAL domain › EAL	0.50	47.0	4.51e-01	100.0%	89.7%
3570896	2007.5.1.21 ↗	a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › NXPE4_C	0.50	44.0	4.26e-01	96.6%	83.0%
3800922	2005.1.1.0 ↗	a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains	0.50	30.0	3.54e-01	97.9%	85.2%

D2 high residues 304-399

PDB

Domain cluster: representative

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2qsdA01	3.10.20.10	Alpha Beta › Roll › Ubiquitin-like (UB roll) ›	0.55	34.0	3.82e-01	96.9%	86.6%
1zoyB01	3.10.20.30	Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain	0.50	44.0	4.33e-01	100.0%	93.4%
2jxtA01	3.10.20.10	Alpha Beta › Roll › Ubiquitin-like (UB roll) ›	0.50	31.0	3.40e-01	82.3%	77.6%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4166773	102.1.1.1 ↗	alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › SAM_1	0.59	34.0	3.64e-01	74.0%	65.0%
4967222	3115.1.1.1 ↗	a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A	0.51	30.0	3.52e-01	79.2%	93.3%

D3 medium residues 1-62

PDB

Domain cluster: representative

D4 medium residues 417-479

PDB

Domain cluster: representative

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5mmjn01	1.10.287.1480	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.55	45.0	4.08e-01	92.1%	65.2%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3742626	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.61	44.0	2.55e-01	77.8%	7.8%
3257161	109.4.1.883 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2	0.50	39.0	2.47e-01	92.1%	38.8%