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IMGVR_UViG_3300010235_000004-3300010235-Ga0136247_100002931
Arc-VirIMGVR_UViG_3300010235_000004-3300010235-Ga0136247_100002931
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 99-185
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF13884.12 best | Peptidase_S74 | 23.8 | 6.10e-05 | 49.4% | 70.7% |
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3gw6D02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.78 | 71.0 | 5.75e-01 | 100.0% | 81.4% |
| 3gudA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.76 | 64.0 | 5.76e-01 | 90.8% | 88.2% |
| 3r4iA02 | 6.10.140.960 | Special › Helix non-globular › Helix Hairpins › | 0.64 | 35.0 | 4.06e-01 | 90.8% | 76.7% |
| 4ikbA00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.61 | 30.0 | 2.66e-01 | 100.0% | 30.2% |
| 5zyrA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 41.0 | 3.48e-01 | 98.9% | 51.7% |
ECOD (21)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1509442 | 3240.1.1.1 ↗ | alpha arrays › Intramolecular chaperone domain in virus tail spike protein › Intramolecular chaperone domain in virus tail spike protein › Intramolecular chaperone domain in virus tail spike protein › Peptidase_S74 | 0.77 | 70.0 | 5.82e-01 | 100.0% | 89.4% |
| 382463 | 3240.1.1.1 ↗ | alpha arrays › Intramolecular chaperone domain in virus tail spike protein › Intramolecular chaperone domain in virus tail spike protein › Intramolecular chaperone domain in virus tail spike protein › Peptidase_S74 | 0.76 | 63.0 | 5.68e-01 | 90.8% | 86.7% |
| 4935618 | 101.1.2.141 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_24 | 0.57 | 47.0 | 4.59e-01 | 100.0% | 81.1% |
| 1180647 | 205.1.1.35 ↗ | a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4+Fer4_7 | 0.57 | 30.0 | 3.24e-01 | 72.4% | 56.6% |
| 4002132 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.56 | 50.0 | 3.41e-01 | 100.0% | 33.5% |
| 3938146 | 3382.1.1.1 ↗ | alpha arrays › Protein Wnt-8 › Protein Wnt-8 › Protein Wnt-8 › wnt | 0.55 | 37.0 | 2.54e-01 | 71.3% | 50.1% |
| 4022243 | 101.1.2.517 ↗ | alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc82, HTH_9, POLR3C_WHD | 0.54 | 45.0 | 2.82e-01 | 92.0% | 19.4% |
| 3488429 | 375.1.1.179 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha | 0.53 | 45.0 | 3.53e-01 | 93.1% | 52.4% |
| 3223233 | 375.1.1.179 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha | 0.53 | 46.0 | 3.39e-01 | 95.4% | 42.6% |
| 3620201 | 3382.1.1.1 ↗ | alpha arrays › Protein Wnt-8 › Protein Wnt-8 › Protein Wnt-8 › wnt | 0.53 | 38.0 | 2.62e-01 | 75.9% | 50.6% |
| 3550392 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 45.0 | 3.58e-01 | 95.4% | 53.0% |
| 3626235 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.52 | 45.0 | 3.11e-01 | 98.9% | 80.0% |
| 5080275 | 101.1.2.914 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF6015 | 0.52 | 46.0 | 4.16e-01 | 100.0% | 81.7% |
| 4682218 | 3382.1.1.1 ↗ | alpha arrays › Protein Wnt-8 › Protein Wnt-8 › Protein Wnt-8 › wnt | 0.52 | 36.0 | 2.52e-01 | 73.6% | 50.9% |
| 3513808 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.51 | 42.0 | 3.04e-01 | 92.0% | 47.4% |
| 3412037 | 3382.1.1.1 ↗ | alpha arrays › Protein Wnt-8 › Protein Wnt-8 › Protein Wnt-8 › wnt | 0.51 | 36.0 | 2.54e-01 | 73.6% | 55.5% |
| 3789440 | 376.1.1.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 | 0.51 | 35.0 | 3.10e-01 | 100.0% | 47.7% |
| 3485716 | 101.1.2.31 ↗ | alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha | 0.51 | 44.0 | 3.42e-01 | 95.4% | 51.6% |
| 3677582 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.51 | 43.0 | 3.13e-01 | 96.6% | 99.2% |
| 4595466 | 3572.1.1.2 ↗ | a+b complex topology › Cascade subunit Csa5 › Cascade subunit Csa5 › Cascade subunit Csa5 › Cas_Csa5 | 0.50 | 29.0 | 2.64e-01 | 74.7% | 39.2% |
| 3655529 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.50 | 40.0 | 2.91e-01 | 89.7% | 100.0% |
D2
medium
residues 1-75
Domain cluster:
rep: KJ528544.1__AHZ10892.1__WP2_20__00020__D418-502
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1p9hA00 | 2.150.10.10 | Mainly Beta › 2 Solenoid › Alkaline Protease, subunit P, domain 1 › Serralysin-like metalloprotease, C-terminal | 0.83 | 69.0 | 5.04e-01 | 100.0% | 36.3% |
| 2xqhA01 | 2.150.10.10 | Mainly Beta › 2 Solenoid › Alkaline Protease, subunit P, domain 1 › Serralysin-like metalloprotease, C-terminal | 0.77 | 72.0 | 5.78e-01 | 100.0% | 56.3% |
| 1fxjA02 | 2.160.10.10 | Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins | 0.72 | 61.0 | 5.65e-01 | 92.0% | 79.6% |
| 1hv9B02 | 2.160.10.10 | Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins | 0.72 | 63.0 | 4.65e-01 | 96.0% | 55.0% |
| 4m9cA02 | 2.160.10.10 | Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins | 0.72 | 61.0 | 5.31e-01 | 94.7% | 83.5% |
| 1yp2A02 | 2.160.10.10 | Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins | 0.71 | 60.0 | 4.91e-01 | 92.0% | 80.7% |
| 5jxxA01 | 2.160.10.10 | Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins | 0.70 | 60.0 | 4.44e-01 | 94.7% | 57.1% |
| 7d73C02 | 2.160.10.10 | Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins | 0.70 | 61.0 | 4.70e-01 | 97.3% | 79.8% |
| 2i5kA02 | 2.160.10.10 | Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins | 0.69 | 57.0 | 5.04e-01 | 92.0% | 94.6% |
| 7d6c401 | 2.160.10.10 | Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins | 0.68 | 59.0 | 5.40e-01 | 97.3% | 94.9% |
| 3mqgC01 | 2.160.10.10 | Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins | 0.67 | 59.0 | 4.71e-01 | 100.0% | 50.3% |
| 3f1xA02 | 2.160.10.10 | Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins | 0.66 | 56.0 | 5.25e-01 | 96.0% | 97.9% |
| 5v8sA02 | 3.40.50.360 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain | 0.55 | 38.0 | 3.05e-01 | 72.0% | 94.0% |
ECOD (44)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3978492 | 3512.1.1.0 ↗ | beta duplicates or obligate multimers › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain | 0.74 | 69.0 | 4.66e-01 | 100.0% | 33.2% |
| 1036377 | 208.2.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Adhesin YadA, collagen-binding domain › Adhesin YadA, collagen-binding domain › YadA_head | 0.74 | 69.0 | 5.83e-01 | 100.0% | 70.9% |
| 3965420 | 208.2.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Adhesin YadA, collagen-binding domain › Adhesin YadA, collagen-binding domain › YadA_head | 0.73 | 67.0 | 5.50e-01 | 97.3% | 70.4% |
| 4029128 | 208.1.1.16 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › LbH_EIF2B | 0.73 | 61.0 | 5.34e-01 | 90.7% | 62.7% |
| 4028622 | 208.1.1.16 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › LbH_EIF2B | 0.73 | 64.0 | 4.73e-01 | 96.0% | 56.8% |
| 4572690 | 208.2.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Adhesin YadA, collagen-binding domain › Adhesin YadA, collagen-binding domain › YadA_head | 0.73 | 66.0 | 5.67e-01 | 96.0% | 76.4% |
| 5083946 | 208.1.1.17 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › GMPPB_C | 0.72 | 64.0 | 5.79e-01 | 100.0% | 73.0% |
| 3623257 | 208.1.1.20 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep, GMPPB_C | 0.72 | 65.0 | 4.94e-01 | 100.0% | 49.1% |
| 7242 | 208.1.1.17 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › GMPPB_C | 0.72 | 61.0 | 6.02e-01 | 92.0% | 94.9% |
| 3575982 | 7516.1.1.157 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › LbH_EIF2B | 0.72 | 63.0 | 3.84e-01 | 96.0% | 25.4% |
| 5075621 | 208.1.1.17 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › GMPPB_C | 0.72 | 62.0 | 5.07e-01 | 94.7% | 65.9% |
| 5047610 | 208.1.1.17 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › GMPPB_C | 0.72 | 63.0 | 4.67e-01 | 96.0% | 70.3% |
| 3958123 | 208.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes | 0.72 | 62.0 | 5.52e-01 | 94.7% | 82.9% |
| None | — | 0.72 | 63.0 | 4.48e-01 | 96.0% | 59.5% | |
| 4997321 | 208.1.1.17 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › GMPPB_C | 0.72 | 63.0 | 5.07e-01 | 97.3% | 77.1% |
| 5049128 | 208.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes | 0.72 | 61.0 | 4.66e-01 | 94.7% | 64.6% |
| 5081284 | 208.1.1.16 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › LbH_EIF2B | 0.72 | 62.0 | 5.50e-01 | 94.7% | 83.8% |
| 3923739 | 208.1.1.20 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep, GMPPB_C | 0.72 | 60.0 | 5.74e-01 | 90.7% | 81.2% |
| 4998131 | 208.1.1.17 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › GMPPB_C | 0.71 | 61.0 | 5.13e-01 | 94.7% | 86.7% |
| 3262883 | 208.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes | 0.71 | 61.0 | 4.75e-01 | 96.0% | 60.0% |
| 4963261 | 208.1.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep | 0.71 | 59.0 | 3.94e-01 | 90.7% | 32.9% |
| 3884550 | 208.1.1.16 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › LbH_EIF2B | 0.71 | 63.0 | 5.40e-01 | 98.7% | 75.4% |
| 4108042 | 208.1.1.4 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep,Hexapep_2 | 0.71 | 62.0 | 4.85e-01 | 97.3% | 70.0% |
| 3212946 | 208.1.1.16 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › LbH_EIF2B | 0.71 | 62.0 | 5.32e-01 | 97.3% | 72.3% |
| 4013675 | 208.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes | 0.71 | 59.0 | 4.42e-01 | 92.0% | 53.0% |
| 4978918 | 208.1.1.17 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › GMPPB_C | 0.70 | 62.0 | 5.42e-01 | 98.7% | 91.3% |
| 5050347 | 208.1.1.17 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › GMPPB_C | 0.70 | 61.0 | 5.09e-01 | 94.7% | 74.4% |
| 4410916 | 208.1.1.4 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep,Hexapep_2 | 0.70 | 60.0 | 4.22e-01 | 94.7% | 56.2% |
| 3255570 | 208.1.1.16 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › LbH_EIF2B | 0.70 | 62.0 | 4.88e-01 | 100.0% | 68.8% |
| 4943469 | 208.1.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep | 0.70 | 60.0 | 4.48e-01 | 94.7% | 57.1% |
| 3250015 | 208.1.1.16 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › LbH_EIF2B | 0.70 | 62.0 | 5.61e-01 | 97.3% | 83.0% |
| 4026099 | 208.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes | 0.70 | 58.0 | 4.69e-01 | 93.3% | 54.0% |
| 4362605 | 208.1.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep | 0.70 | 60.0 | 4.17e-01 | 96.0% | 58.0% |
| 3290654 | 208.1.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep | 0.69 | 58.0 | 4.24e-01 | 94.7% | 55.8% |
| 4015644 | 208.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes | 0.69 | 58.0 | 4.18e-01 | 92.0% | 53.3% |
| 3787853 | 208.1.1.17 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › GMPPB_C | 0.69 | 60.0 | 4.87e-01 | 97.3% | 88.8% |
| 3705657 | 208.1.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep | 0.68 | 56.0 | 3.79e-01 | 92.0% | 31.9% |
| 3182022 | 208.1.1.2 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep,Mac | 0.68 | 57.0 | 4.16e-01 | 92.0% | 55.2% |
| 4046208 | 208.1.1.15 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep_GlmU | 0.67 | 59.0 | 5.36e-01 | 97.3% | 87.0% |
| 3984656 | 208.1.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep | 0.67 | 58.0 | 4.40e-01 | 96.0% | 55.6% |
| 3693046 | 208.1.1.2 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep,Mac | 0.67 | 59.0 | 4.31e-01 | 98.7% | 84.3% |
| 4597945 | 208.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes | 0.66 | 57.0 | 5.31e-01 | 97.3% | 90.5% |
| 3339925 | 208.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes | 0.65 | 58.0 | 3.81e-01 | 100.0% | 92.0% |
| 4174964 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.57 | 49.0 | 3.64e-01 | 93.3% | 38.9% |