←Back to structures
IMGVR_UViG_3300010239_000003-3300010239-Ga0136451_10000014729
Arc-VirIMGVR_UViG_3300010239_000003-3300010239-Ga0136451_10000014729
Identity
- Kingdom:
- archaea
Quality
68.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 30-79
Domain cluster:
representative
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3bmbA01 | 1.10.286.20 | Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 › | 0.64 | 48.0 | 5.06e-01 | 92.0% | 95.3% |
| 4g56A01 | 3.20.20.150 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes | 0.62 | 49.0 | 3.13e-01 | 92.0% | 21.6% |
| 3gpvA00 | 1.10.1660.10 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.61 | 41.0 | 3.25e-01 | 72.0% | 37.2% |
| 7xhzA01 | 3.30.1240.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › | 0.60 | 49.0 | 3.85e-01 | 100.0% | 42.3% |
| 6dnwA01 | 3.90.1750.20 | Alpha Beta › Alpha-Beta Complex › Hect, E3 ligase catalytic domain fold › Putative Large Serine Recombinase; Chain B, Domain 2 | 0.58 | 47.0 | 3.68e-01 | 96.0% | 67.5% |
| 2zhgA00 | 1.10.1660.10 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.56 | 37.0 | 2.93e-01 | 70.0% | 34.7% |
| 3mzkB03 | 1.20.58.940 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.56 | 39.0 | 3.62e-01 | 78.0% | 58.6% |
| 4yy8B01 | 3.30.710.10 | Alpha Beta › 2-Layer Sandwich › Potassium Channel Kv1.1; Chain A › Potassium Channel Kv1.1; Chain A | 0.54 | 33.0 | 2.86e-01 | 70.0% | 38.5% |
| 5okaA00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.52 | 41.0 | 2.45e-01 | 90.0% | 28.8% |
| 7bqiA01 | 1.20.58.900 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › RUN domain | 0.52 | 40.0 | 2.98e-01 | 92.0% | 96.0% |
| 4mfzA02 | 3.40.630.120 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › | 0.51 | 43.0 | 3.21e-01 | 100.0% | 50.3% |
| 1u7kA00 | 1.10.375.10 | Mainly Alpha › Orthogonal Bundle › Human Immunodeficiency Virus Type 1 Capsid Protein › Human Immunodeficiency Virus Type 1 Capsid Protein | 0.51 | 44.0 | 3.33e-01 | 100.0% | 82.4% |
| 6zhhA01 | 3.40.1110.10 | Alpha Beta › 3-Layer(aba) Sandwich › Calcium-transporting ATPase, cytoplasmic domain N › Calcium-transporting ATPase, cytoplasmic domain N | 0.51 | 41.0 | 2.89e-01 | 90.0% | 34.4% |
| 5ve3A02 | 3.40.250.10 | Alpha Beta › 3-Layer(aba) Sandwich › Oxidized Rhodanese; domain 1 › Rhodanese-like domain | 0.51 | 41.0 | 3.34e-01 | 100.0% | 86.6% |
| 4uijA00 | 3.30.710.10 | Alpha Beta › 2-Layer Sandwich › Potassium Channel Kv1.1; Chain A › Potassium Channel Kv1.1; Chain A | 0.50 | 34.0 | 2.89e-01 | 98.0% | 35.6% |
| 1p91B00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.50 | 36.0 | 2.39e-01 | 80.0% | 29.5% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2126107 | 192.1.1.3 ↗ | alpha bundles › Long alpha-hairpin › GreA transcript cleavage protein, N-terminal domain › GreA transcript cleavage protein, N-terminal domain › Rnk_N | 0.64 | 48.0 | 5.03e-01 | 92.0% | 93.2% |
| 3437437 | 101.1.1.76 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Integrase_H2C2 | 0.61 | 41.0 | 3.30e-01 | 70.0% | 81.0% |
| 4963816 | 101.1.17.0 ↗ | alpha arrays › HTH › HTH › FF domain | 0.61 | 43.0 | 3.55e-01 | 80.0% | 95.2% |
| 3590291 | 101.1.1.40 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Recombinase | 0.60 | 47.0 | 3.48e-01 | 92.0% | 74.0% |
| 3605488 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.59 | 41.0 | 3.73e-01 | 74.0% | 78.6% |
| 3663911 | 246.2.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos | 0.59 | 47.0 | 2.99e-01 | 90.0% | 41.1% |
| 5048641 | 2006.1.4.50 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › DUF3368 | 0.59 | 46.0 | 3.37e-01 | 100.0% | 36.0% |
| 3933411 | 109.4.1.493 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Noc2 | 0.56 | 47.0 | 2.75e-01 | 100.0% | 14.8% |
| 4972758 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.56 | 47.0 | 2.88e-01 | 100.0% | 16.7% |
| 4021906 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.56 | 48.0 | 2.85e-01 | 100.0% | 19.8% |
| 3408415 | 6039.1.1.1 ↗ | few secondary structure elements › CLIP domain › CLIP domain › CLIP domain › CLIP | 0.54 | 41.0 | 3.89e-01 | 82.0% | 90.0% |
| 3311132 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.54 | 43.0 | 3.67e-01 | 90.0% | 67.1% |
| 3882404 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.53 | 40.0 | 3.17e-01 | 84.0% | 72.7% |
| 3282845 | 304.8.1.26 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › DUF3145 | 0.52 | 40.0 | 2.92e-01 | 82.0% | 28.7% |
| 3614068 | 5055.1.1.0 ↗ | extended segments › Small-conductance potassium channel › Small-conductance potassium channel › Small-conductance potassium channel | 0.52 | 37.0 | 3.32e-01 | 78.0% | 51.2% |