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IMGVR_UViG_3300010239_000003-3300010239-Ga0136451_10000014731
Arc-VirIMGVR_UViG_3300010239_000003-3300010239-Ga0136451_10000014731
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 97-199
Domain cluster:
rep: MH673674.1__AYJ74791.1__phiMa_08__00008__D72-152
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03837.20 best | RecT | 66.3 | 4.00e-18 | 100.0% | 57.4% |
D2
high
residues 271-324
Domain cluster:
representative
CATH (52)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2oxlA00 | 1.20.5.5260 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.84 | 77.0 | 7.34e-01 | 100.0% | 91.9% |
| 2nn4A00 | 1.10.287.760 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YqgQ-like | 0.73 | 63.0 | 6.08e-01 | 96.3% | 93.5% |
| 6vudA01 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.72 | 61.0 | 4.75e-01 | 90.7% | 79.8% |
| 2uubT00 | 1.20.58.110 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Ribosomal protein S20 | 0.70 | 57.0 | 4.59e-01 | 87.0% | 58.6% |
| 4oydB00 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.69 | 59.0 | 4.49e-01 | 92.6% | 80.3% |
| 4kb2A01 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.68 | 58.0 | 4.52e-01 | 92.6% | 80.7% |
| 2lwxA00 | 1.10.8.840 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ribosome-associated complex head domain | 0.67 | 54.0 | 4.65e-01 | 90.7% | 67.0% |
| 3dplC03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.67 | 51.0 | 4.54e-01 | 100.0% | 56.6% |
| 6wshA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.66 | 46.0 | 4.59e-01 | 79.6% | 72.7% |
| 2odmA00 | 1.10.287.750 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › SO2669-like | 0.66 | 59.0 | 5.10e-01 | 96.3% | 82.3% |
| 3mggA02 | 6.10.140.1580 | Special › Helix non-globular › Helix Hairpins › | 0.66 | 57.0 | 4.89e-01 | 100.0% | 80.9% |
| 3f2bA05 | 6.10.50.10 | Special › Helix non-globular › Insulin-like, subunit E › | 0.65 | 42.0 | 4.41e-01 | 79.6% | 72.9% |
| 1s8nA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.65 | 45.0 | 4.44e-01 | 79.6% | 69.0% |
| 3b40A02 | 1.10.287.650 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › L27 domain | 0.65 | 47.0 | 4.61e-01 | 94.4% | 72.4% |
| 2c9oB03 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.64 | 43.0 | 3.70e-01 | 79.6% | 44.6% |
| 5c8aA01 | 1.10.1240.10 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain | 0.64 | 56.0 | 4.93e-01 | 96.3% | 82.1% |
| 3ugsB00 | 3.40.1180.10 | Alpha Beta › 3-Layer(aba) Sandwich › Undecaprenyl pyrophosphate synthetase › Decaprenyl diphosphate synthase-like | 0.64 | 54.0 | 3.57e-01 | 92.6% | 62.0% |
| 3uk6A02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.64 | 43.0 | 3.74e-01 | 72.2% | 45.8% |
| 3dtoA01 | 1.10.472.50 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › HD-domain/PDEase-like | 0.63 | 47.0 | 4.15e-01 | 100.0% | 52.3% |
| 2z4sA02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.63 | 41.0 | 3.71e-01 | 70.4% | 50.0% |
| 3zxsC02 | 1.25.40.80 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.63 | 56.0 | 4.00e-01 | 100.0% | 39.0% |
| 2fe1A00 | 3.40.50.1010 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease | 0.63 | 55.0 | 4.06e-01 | 96.3% | 44.6% |
| 1q2lA04 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.62 | 50.0 | 3.45e-01 | 100.0% | 54.4% |
| 1knzA01 | 6.10.280.20 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Rotavirus non-structural protein NSP3, N-terminal domain | 0.62 | 45.0 | 3.71e-01 | 79.6% | 53.9% |
| 1a41A02 | 1.20.120.380 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Type 1-topoisomerase catalytic fragment, domain 2 | 0.61 | 49.0 | 4.33e-01 | 100.0% | 57.4% |
| 1vfrA00 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.61 | 47.0 | 3.18e-01 | 87.0% | 39.2% |
| 2janA02 | 1.10.240.10 | Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase | 0.60 | 49.0 | 4.20e-01 | 100.0% | 76.2% |
| 7y11B01 | 1.10.8.20 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › N-terminal domain of phosphatidylinositol transfer protein sec14p | 0.60 | 41.0 | 3.97e-01 | 72.2% | 63.5% |
| 1hlvA02 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.60 | 49.0 | 4.79e-01 | 100.0% | 95.0% |
| 3nrkA01 | 1.10.4030.10 | Mainly Alpha › Orthogonal Bundle › Triger factor/SurA peptide-binding fold › Porin chaperone SurA, peptide-binding domain | 0.59 | 41.0 | 2.86e-01 | 75.9% | 79.2% |
| 3e3vA03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 48.0 | 4.82e-01 | 100.0% | 96.4% |
| 1gnlA01 | 1.20.1270.20 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.59 | 46.0 | 3.43e-01 | 85.2% | 57.6% |
| 5h20A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 44.0 | 3.78e-01 | 100.0% | 47.6% |
| 2pbiA02 | 1.10.1240.60 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › | 0.58 | 40.0 | 3.31e-01 | 100.0% | 38.6% |
| 2jgdB02 | 3.40.50.970 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains | 0.58 | 50.0 | 3.11e-01 | 100.0% | 57.0% |
| 6dv2G02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.58 | 51.0 | 3.52e-01 | 100.0% | 50.0% |
| 2m4eA00 | 1.20.120.1930 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Uncharacterised protein PF16691 family | 0.58 | 48.0 | 4.17e-01 | 92.6% | 69.8% |
| 2w43A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.57 | 45.0 | 4.50e-01 | 88.9% | 96.5% |
| 2xb4A00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.57 | 46.0 | 3.20e-01 | 100.0% | 77.1% |
| 4jd9G00 | 1.10.238.20 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain | 0.56 | 48.0 | 3.74e-01 | 96.3% | 45.8% |
| 3hwrA02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.56 | 45.0 | 3.62e-01 | 100.0% | 52.7% |
| 4p63D00 | 3.40.910.10 | Alpha Beta › 3-Layer(aba) Sandwich › Deoxyhypusine Synthase › Deoxyhypusine synthase | 0.56 | 45.0 | 2.92e-01 | 100.0% | 22.1% |
| 3of4A00 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.56 | 41.0 | 2.85e-01 | 83.3% | 39.6% |
| 2ptfB02 | 1.20.58.290 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hypothetical membrane protein ta0354_69_121. | 0.55 | 45.0 | 4.48e-01 | 94.4% | 89.5% |
| 2vxdA00 | 1.10.10.2100 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Nucleophosmin, C-terminal domain | 0.55 | 45.0 | 4.54e-01 | 98.1% | 96.3% |
| 1ybzA00 | 1.20.59.10 | Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase | 0.55 | 44.0 | 3.88e-01 | 100.0% | 61.8% |
| 1f5qB02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.54 | 43.0 | 3.42e-01 | 98.1% | 72.5% |
| 3zhiA00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.54 | 41.0 | 3.76e-01 | 94.4% | 61.6% |
| 7d3uC01 | 1.10.287.3510 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.53 | 40.0 | 3.20e-01 | 98.1% | 41.1% |
| 3mdnD00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.53 | 44.0 | 3.01e-01 | 100.0% | 50.2% |
| 3oxfA05 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.52 | 39.0 | 3.61e-01 | 83.3% | 65.3% |
| 1yxrA01 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.50 | 40.0 | 3.58e-01 | 87.0% | 62.2% |
ECOD (67)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4009124 | 639.2.1.5 ↗ | alpha arrays › HHA-like › Regulator of acid resistance influenced by indole (AriR) › Regulator of acid resistance influenced by indole (AriR) › PF27475 | 0.86 | 77.0 | 7.41e-01 | 98.1% | 93.3% |
| 3977558 | 639.2.1.3 ↗ | alpha arrays › HHA-like › Regulator of acid resistance influenced by indole (AriR) › Regulator of acid resistance influenced by indole (AriR) › BDM | 0.84 | 74.0 | 7.44e-01 | 98.1% | 100.0% |
| 3943035 | 639.2.1.0 ↗ | alpha arrays › HHA-like › Regulator of acid resistance influenced by indole (AriR) › Regulator of acid resistance influenced by indole (AriR) | 0.83 | 73.0 | 6.93e-01 | 100.0% | 87.7% |
| 5021741 | 198.1.1.0 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like | 0.79 | 64.0 | 5.83e-01 | 100.0% | 67.1% |
| 3262145 | 2004.1.1.191 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_17 | 0.78 | 61.0 | 4.11e-01 | 85.2% | 77.9% |
| 5078823 | 2004.1.1.76 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF87 | 0.77 | 68.0 | 4.09e-01 | 100.0% | 23.8% |
| 4270503 | 604.9.1.1 ↗ | alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 › Ribosomal_S20p | 0.77 | 62.0 | 5.20e-01 | 85.2% | 67.1% |
| 4201754 | 604.9.1.1 ↗ | alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 › Ribosomal_S20p | 0.76 | 62.0 | 4.98e-01 | 85.2% | 60.0% |
| 3428374 | 109.7.1.25 ↗ | alpha superhelices › Repetitive alpha hairpins › Cytochrome c oxidase subunit E › Cytochrome c oxidase subunit E › PPR | 0.76 | 62.0 | 4.79e-01 | 98.1% | 41.7% |
| 5070046 | 2004.1.1.191 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_17 | 0.75 | 59.0 | 4.02e-01 | 85.2% | 76.8% |
| 4061821 | 604.9.1.1 ↗ | alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 › Ribosomal_S20p | 0.75 | 60.0 | 5.16e-01 | 85.2% | 62.5% |
| 5038190 | 2004.1.1.192 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_18 | 0.74 | 58.0 | 4.00e-01 | 85.2% | 80.6% |
| 3965373 | 101.1.3.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like | 0.74 | 51.0 | 4.68e-01 | 100.0% | 55.7% |
| 5055734 | 2004.1.1.192 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_18 | 0.74 | 63.0 | 4.23e-01 | 90.7% | 77.8% |
| 5028316 | 2004.1.1.192 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_18 | 0.73 | 62.0 | 4.23e-01 | 90.7% | 79.9% |
| 5029322 | 2004.1.1.192 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_18 | 0.73 | 57.0 | 3.95e-01 | 85.2% | 81.1% |
| 5033360 | 101.1.1.131 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Arch_fla_DE | 0.73 | 59.0 | 5.09e-01 | 100.0% | 56.5% |
| 4193935 | 604.9.1.1 ↗ | alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 › Ribosomal_S20p | 0.73 | 60.0 | 5.03e-01 | 87.0% | 64.7% |
| 3957298 | 604.9.1.1 ↗ | alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 › Ribosomal_S20p | 0.73 | 63.0 | 5.15e-01 | 90.7% | 63.3% |
| 4940350 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.73 | 57.0 | 3.94e-01 | 85.2% | 80.0% |
| 4979616 | 2004.1.1.191 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_17 | 0.73 | 56.0 | 3.91e-01 | 85.2% | 79.4% |
| 4563321 | 604.9.1.1 ↗ | alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 › Ribosomal_S20p | 0.73 | 59.0 | 5.04e-01 | 87.0% | 60.7% |
| 4989422 | 2004.1.1.192 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_18 | 0.73 | 61.0 | 4.10e-01 | 90.7% | 76.7% |
| 5067293 | 2004.1.1.191 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_17 | 0.72 | 56.0 | 3.85e-01 | 85.2% | 76.8% |
| 4063100 | 604.9.1.1 ↗ | alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 › Ribosomal_S20p | 0.72 | 59.0 | 5.07e-01 | 87.0% | 68.8% |
| 4181805 | 604.9.1.1 ↗ | alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 › Ribosomal_S20p | 0.71 | 61.0 | 5.32e-01 | 90.7% | 69.2% |
| 5056343 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.71 | 60.0 | 4.71e-01 | 100.0% | 43.2% |
| 4289855 | 604.9.1.1 ↗ | alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 › Ribosomal_S20p | 0.70 | 60.0 | 5.61e-01 | 90.7% | 87.7% |
| 5059586 | 181.1.1.0 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins | 0.70 | 62.0 | 5.45e-01 | 98.1% | 81.0% |
| 3713190 | 4336.2.1.1 ↗ | alpha duplicates or obligate multimers › YheA/YmcA-like › Protein SUS1 › Protein SUS1 › EnY2 | 0.70 | 47.0 | 3.94e-01 | 81.5% | 40.0% |
| 4942322 | 2004.1.1.191 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_17 | 0.70 | 54.0 | 3.72e-01 | 85.2% | 78.4% |
| 3515268 | 186.2.1.0 ↗ | alpha arrays › lambda integrase-N-like › VEFS domain › VEFS domain | 0.67 | 59.0 | 4.71e-01 | 96.3% | 49.5% |
| 3238459 | 616.1.1.0 ↗ | alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain | 0.67 | 49.0 | 4.69e-01 | 79.6% | 81.5% |
| 3505626 | 186.2.1.1 ↗ | alpha arrays › lambda integrase-N-like › VEFS domain › VEFS domain › VEFS-Box | 0.67 | 60.0 | 4.93e-01 | 98.1% | 55.8% |
| 5079468 | 2004.1.1.191 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_17 | 0.67 | 55.0 | 3.78e-01 | 90.7% | 75.7% |
| 4341780 | 4957.1.1.0 ↗ | a+b complex topology › helical domain in yeast RNA-polymerases › third helical domain in yeast RNA-polymerase II beta-prime subunit › third helical domain in yeast RNA-polymerase II beta-prime subunit | 0.67 | 46.0 | 4.34e-01 | 72.2% | 60.0% |
| 3935995 | 101.1.2.127 ↗ | alpha arrays › HTH › HTH › winged helix domain › Cullin_Nedd8 | 0.66 | 51.0 | 4.66e-01 | 100.0% | 62.7% |
| 3616358 | 4009.1.1.0 ↗ | alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins | 0.65 | 42.0 | 3.89e-01 | 72.2% | 51.4% |
| 3960463 | 103.12.1.0 ↗ | alpha arrays › RuvA-C › ANTAR domain › ANTAR domain | 0.65 | 44.0 | 4.36e-01 | 79.6% | 66.7% |
| 3951854 | 103.12.1.1 ↗ | alpha arrays › RuvA-C › ANTAR domain › ANTAR domain › ANTAR | 0.64 | 44.0 | 4.34e-01 | 79.6% | 66.7% |
| 3738331 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.64 | 46.0 | 4.60e-01 | 79.6% | 74.5% |
| 4955174 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.64 | 54.0 | 3.96e-01 | 92.6% | 45.7% |
| 4169204 | 101.35.1.0 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX | 0.64 | 49.0 | 4.94e-01 | 100.0% | 87.3% |
| 4983539 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.64 | 58.0 | 3.66e-01 | 100.0% | 77.3% |
| 3785070 | 101.1.2.127 ↗ | alpha arrays › HTH › HTH › winged helix domain › Cullin_Nedd8 | 0.63 | 50.0 | 4.17e-01 | 100.0% | 48.1% |
| 4644218 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.63 | 47.0 | 4.05e-01 | 79.6% | 68.2% |
| 4933155 | 198.1.1.27 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like › PF27234 | 0.62 | 50.0 | 4.51e-01 | 98.1% | 95.3% |
| 4961037 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.61 | 40.0 | 4.01e-01 | 72.2% | 65.5% |
| 3873692 | 101.1.1.21 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc5 | 0.61 | 49.0 | 4.95e-01 | 100.0% | 89.1% |
| 4932863 | 101.1.2.947 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF27234 | 0.61 | 50.0 | 4.54e-01 | 100.0% | 67.5% |
| 4965615 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.61 | 46.0 | 4.76e-01 | 100.0% | 90.0% |
| 4093240 | 101.35.1.4 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH3 | 0.61 | 49.0 | 4.88e-01 | 96.3% | 92.7% |
| 4025457 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.60 | 41.0 | 3.63e-01 | 72.2% | 62.4% |
| 4982784 | 148.1.3.42 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › RCF1-5-like_lid | 0.60 | 42.0 | 4.04e-01 | 72.2% | 65.0% |
| 3922168 | 101.1.1.21 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc5 | 0.60 | 50.0 | 4.69e-01 | 100.0% | 82.9% |
| 5069212 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.60 | 42.0 | 3.97e-01 | 100.0% | 62.5% |
| 4993593 | 198.1.1.27 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like › PF27234 | 0.59 | 48.0 | 4.36e-01 | 100.0% | 66.3% |
| 3289310 | 103.12.1.1 ↗ | alpha arrays › RuvA-C › ANTAR domain › ANTAR domain › ANTAR | 0.59 | 43.0 | 4.27e-01 | 85.2% | 74.5% |
| 1068638 | 101.35.1.4 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH3 | 0.59 | 48.0 | 4.82e-01 | 100.0% | 96.4% |
| 5048919 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.57 | 41.0 | 3.98e-01 | 81.5% | 68.3% |
| 4992012 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.57 | 48.0 | 4.67e-01 | 100.0% | 88.3% |
| 4397003 | 101.35.1.0 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX | 0.57 | 45.0 | 4.65e-01 | 94.4% | 100.0% |
| 3784009 | 138.1.1.2 ↗ | alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › Rep_fac_C | 0.57 | 44.0 | 3.78e-01 | 90.7% | 66.3% |
| 5036595 | 101.1.8.0 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes | 0.56 | 46.0 | 4.62e-01 | 98.1% | 94.5% |
| 5045223 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.56 | 43.0 | 3.93e-01 | 100.0% | 60.0% |
| 3600071 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.55 | 43.0 | 4.03e-01 | 96.3% | 70.8% |
| 3896730 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.54 | 44.0 | 3.26e-01 | 88.9% | 83.0% |
D3
medium
residues 16-94_200-227
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03837.20 best | RecT | 32.1 | 1.20e-07 | 62.6% | 26.9% |
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2hszA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.52 | 30.0 | 3.42e-01 | 79.4% | 78.7% |