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IMGVR_UViG_3300010239_000011-3300010239-Ga0136451_1000010608

Arc-Vir

IMGVR_UViG_3300010239_000011-3300010239-Ga0136451_1000010608

Identity

Kingdom:
archaea

Quality

86.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-100
PDB
Domain cluster: representative
CATH (39)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ciuA00 3.10.450.320 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Mitochondrial import inner membrane translocase subunit Tim21 0.73 47.0 4.32e-01 84.5% 52.0%
4bboA00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.72 49.0 4.62e-01 79.4% 59.3%
3bxoA02 2.20.130.10 Mainly Beta › Single Sheet › S-adenosyl-L-methionine-dependent methyltransferases › CAC2371-like domains 0.69 39.0 4.78e-01 81.4% 89.8%
1omoA01 3.30.1780.10 Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 0.67 49.0 4.21e-01 75.3% 57.0%
3mswA00 2.40.128.720 Mainly Beta › Beta Barrel › Lipocalin › 0.67 49.0 4.32e-01 90.7% 53.2%
3qv0A00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.66 49.0 4.05e-01 79.4% 54.7%
4r8oA00 2.40.128.720 Mainly Beta › Beta Barrel › Lipocalin › 0.66 47.0 4.77e-01 89.7% 73.5%
5gv0A00 2.40.160.110 Mainly Beta › Beta Barrel › Porin › 0.64 48.0 4.08e-01 80.4% 66.7%
1x7dB01 3.30.1780.10 Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 0.64 46.0 3.82e-01 75.3% 50.3%
1yqfB00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.63 48.0 3.92e-01 80.4% 70.6%
1y8cA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.63 34.0 4.16e-01 79.4% 85.0%
4akmB00 2.40.160.110 Mainly Beta › Beta Barrel › Porin › 0.62 46.0 3.98e-01 80.4% 71.3%
3a21A02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.62 41.0 4.24e-01 81.4% 72.5%
3klxB00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.60 45.0 3.59e-01 77.3% 60.2%
3tzgA00 2.40.160.150 Mainly Beta › Beta Barrel › Porin › 0.60 49.0 3.69e-01 89.7% 60.7%
3auxA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.59 43.0 2.90e-01 75.3% 36.5%
3uaqB02 2.40.160.90 Mainly Beta › Beta Barrel › Porin › 0.59 43.0 3.66e-01 77.3% 63.8%
3w9kA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.58 43.0 3.83e-01 78.4% 63.7%
2wbnA00 3.30.420.280 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.57 42.0 3.40e-01 76.3% 61.8%
4xmeA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 45.0 3.69e-01 87.6% 46.7%
1uv4A00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.56 42.0 3.02e-01 80.4% 48.8%
1lkeA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 40.0 3.41e-01 81.4% 46.5%
1kyfA01 2.60.40.1230 Mainly Beta › Sandwich › Immunoglobulin-like › Gamma-adaptin ear (GAE) domain 0.55 42.0 3.78e-01 80.4% 90.3%
4frxA01 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.55 47.0 3.14e-01 93.8% 42.6%
2rgqB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 39.0 3.57e-01 77.3% 91.7%
5ncsA02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.54 42.0 3.72e-01 83.5% 97.8%
1r0uA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 41.0 3.64e-01 82.5% 64.1%
4ftxB01 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.53 37.0 3.40e-01 90.7% 55.5%
3thxA02 3.30.420.110 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › MutS, connector domain 0.53 40.0 3.46e-01 82.5% 97.6%
2iecD00 3.30.1300.20 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 7,8-dihydroneopterin aldolase (MptD) 0.52 38.0 3.56e-01 87.6% 62.4%
4k15A00 2.60.40.3860 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 38.0 3.41e-01 77.3% 65.9%
1m2xA00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.52 44.0 3.46e-01 95.9% 53.4%
1qhdA01 2.60.120.170 Mainly Beta › Sandwich › Jelly Rolls › 0.52 43.0 3.69e-01 94.8% 81.8%
1em2A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.51 38.0 3.02e-01 79.4% 61.7%
1z24A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 42.0 3.41e-01 89.7% 87.8%
4h5bA00 3.30.1460.70 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.51 40.0 3.43e-01 83.5% 70.4%
2hzrA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.50 40.0 3.41e-01 86.6% 85.7%
1b9vA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.50 39.0 2.62e-01 84.5% 29.2%
5zbeA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.50 32.0 3.13e-01 90.7% 56.1%
ECOD (59)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3969727 897.2.1.0 ↗ a+b two layers › Acidic mitochondrial matrix protein p32-like › Protein E › Protein E 0.74 55.0 4.68e-01 77.3% 56.7%
3812869 284.1.3.0 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.71 54.0 5.37e-01 80.4% 97.0%
5043415 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.68 47.0 4.36e-01 71.1% 70.0%
3786637 897.1.1.1 ↗ a+b two layers › Acidic mitochondrial matrix protein p32-like › Acidic mitochondrial matrix protein p32 › Acidic mitochondrial matrix protein p32 › MAM33 0.67 50.0 3.92e-01 79.4% 59.8%
3943894 77.1.1.7 ↗ beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › DUF1481 0.66 49.0 4.49e-01 77.3% 75.2%
4008120 5.1.5.139 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › DUF1481 0.66 49.0 4.55e-01 77.3% 78.3%
5079259 2004.1.1.308 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_21 0.66 49.0 3.33e-01 77.3% 39.4%
4114942 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.65 50.0 4.08e-01 84.5% 45.1%
3992540 79.1.1.24 ↗ beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Mlf1IP 0.64 42.0 4.32e-01 91.8% 68.4%
3992567 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.64 49.0 4.49e-01 81.4% 69.6%
3745663 9.1.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.63 41.0 3.36e-01 94.8% 36.4%
3411079 3369.1.1.1 ↗ beta meanders › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 › Lamp2-like_luminal 0.62 50.0 4.08e-01 86.6% 73.3%
4961667 5084.1.1.45 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › PF26421 0.61 44.0 4.18e-01 75.3% 73.9%
5039275 2004.1.1.198 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.61 45.0 2.76e-01 77.3% 24.0%
4932706 2004.1.1.198 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.61 45.0 2.75e-01 77.3% 23.7%
5029795 2004.1.1.198 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.60 45.0 2.98e-01 77.3% 38.2%
5043802 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.60 45.0 4.31e-01 79.4% 80.0%
3907198 71.1.1.0 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.60 47.0 3.63e-01 96.9% 38.5%
3592253 213.1.1.0 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.60 52.0 4.35e-01 92.8% 77.5%
5069317 2004.1.1.198 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.60 43.0 2.84e-01 75.3% 31.5%
3803056 5.1.3.67 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.59 45.0 3.22e-01 79.4% 46.7%
5036111 213.1.1.31 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_10 0.59 50.0 4.23e-01 92.8% 75.0%
5035305 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.59 36.0 3.89e-01 78.4% 72.5%
4963648 2004.1.1.87 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.59 43.0 2.75e-01 77.3% 27.6%
4139499 2004.1.1.293 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_15 0.59 43.0 2.71e-01 77.3% 25.1%
4931027 2004.1.1.198 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.58 43.0 2.80e-01 77.3% 33.2%
4265072 9.1.1.68 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › PF29184 0.58 42.0 3.94e-01 74.2% 95.7%
4947567 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.58 44.0 2.85e-01 81.4% 27.7%
3179848 241.15.1.2 ↗ a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain › PI31_Prot_N 0.58 43.0 3.77e-01 84.5% 54.0%
3599158 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.58 44.0 3.28e-01 79.4% 96.2%
5073876 2004.1.1.198 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.58 44.0 2.82e-01 81.4% 27.4%
4320633 2004.1.1.433 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_23 0.57 44.0 2.83e-01 81.4% 28.4%
4452431 213.1.1.31 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_10 0.56 46.0 4.07e-01 92.8% 78.0%
3512529 216.1.1.2 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › Autophagy_act_C 0.56 43.0 3.66e-01 82.5% 78.1%
5078522 11.10.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.56 41.0 4.08e-01 87.6% 73.3%
3505097 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.55 38.0 4.01e-01 74.2% 80.0%
4024291 11.1.1.105 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Coatamer_beta_C 0.55 40.0 3.61e-01 75.3% 89.2%
4262684 9.1.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.54 43.0 3.49e-01 84.5% 87.2%
3558063 9.1.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.54 42.0 3.50e-01 84.5% 86.9%
5035253 12.3.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.54 46.0 3.34e-01 93.8% 88.7%
3725091 5.1.5.93 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_EMC1_N 0.54 41.0 2.67e-01 81.4% 29.5%
4282380 243.3.1.52 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › UPF0182 0.54 36.0 3.40e-01 85.6% 54.4%
3478602 2484.1.1.48 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II 0.53 39.0 3.18e-01 79.4% 82.0%
3303879 331.3.1.43 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PDF2_C 0.53 47.0 3.50e-01 96.9% 44.6%
3684135 5.1.3.67 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.53 40.0 2.76e-01 79.4% 85.5%
3241305 295.1.1.3 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PurA 0.53 43.0 3.79e-01 86.6% 83.6%
3784793 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 39.0 3.52e-01 79.4% 92.1%
3602267 881.3.1.0 ↗ a+b three layers › Mog1p/PsbP-like › Outer membrane-associated lipoprotein TP0453 › Outer membrane-associated lipoprotein TP0453 0.52 39.0 2.97e-01 77.3% 100.0%
3636263 5.1.3.137 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1, Kelch_2, Kelch_KLHDC2_KLHL20_DRC7 0.52 41.0 2.73e-01 83.5% 88.6%
3645277 2484.1.1.48 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II 0.52 38.0 3.21e-01 78.4% 86.3%
3844416 5.1.4.229 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_EMC1_N 0.52 41.0 2.77e-01 86.6% 93.3%
None — 0.52 40.0 2.91e-01 81.4% 45.7%
3469979 12.3.1.43 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › NCU-G1 0.51 45.0 3.12e-01 100.0% 81.1%
3314307 5.1.3.65 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF295 0.51 39.0 2.66e-01 79.4% 73.8%
3261183 71.1.1.0 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.51 37.0 3.09e-01 97.9% 42.3%
3728883 3692.1.1.0 ↗ a+b two layers › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain 0.51 42.0 3.64e-01 91.8% 73.2%
3293091 9.1.1.33 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › DUF1365 0.51 43.0 3.44e-01 93.8% 64.1%
4011464 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 37.0 2.59e-01 78.4% 37.5%
4544568 719.1.1.5 ↗ beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain › PF27933 0.50 39.0 3.80e-01 83.5% 100.0%