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IMGVR_UViG_3300010240_000008-3300010240-Ga0136450_10000059015

Arc-Vir

IMGVR_UViG_3300010240_000008-3300010240-Ga0136450_10000059015

Identity

Kingdom:
archaea

Quality

84.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 84-136
PDB
Domain cluster: representative
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3hh2D03 3.30.60.30 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.63 42.0 4.58e-01 98.1% 94.9%
1tbrR01 3.30.60.30 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.62 42.0 4.26e-01 96.2% 72.5%
5daeA00 3.30.60.30 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.62 48.0 4.76e-01 98.1% 80.7%
2kswA01 3.30.1490.260 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.62 44.0 4.62e-01 94.3% 89.1%
6jzaA00 3.30.60.30 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.58 39.0 3.46e-01 96.2% 45.7%
4wz0A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.58 40.0 3.24e-01 73.6% 41.3%
1wh2A01 3.30.1490.40 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › GYF domain 0.58 41.0 4.01e-01 86.8% 68.9%
3pm9A02 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.57 44.0 3.57e-01 92.5% 54.9%
5owvD01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.57 43.0 2.90e-01 84.9% 21.6%
4wz2C00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.57 39.0 3.56e-01 73.6% 60.8%
2lvhA00 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.56 39.0 4.06e-01 73.6% 93.3%
1uvgA01 3.30.60.30 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.55 35.0 3.49e-01 75.5% 58.6%
1kbaA00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.55 42.0 4.00e-01 86.8% 69.7%
2o2zA00 3.40.50.10680 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › CofD-like domains 0.54 41.0 2.63e-01 88.7% 55.5%
3fmaA00 3.30.1490.40 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › GYF domain 0.53 40.0 3.59e-01 86.8% 63.0%
3tm4A01 3.30.2130.30 Alpha Beta › 2-Layer Sandwich › VC0802-like › 0.51 42.0 2.98e-01 98.1% 92.6%
2pnqA00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.50 41.0 2.56e-01 100.0% 84.6%
2qr4A02 1.10.287.830 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › putative peptidase helix hairpin domain like 0.50 34.0 3.53e-01 73.6% 93.6%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1489431 3576.1.1.0 ↗ a+b complex topology › Cas8-like › Cascade subunit CasA/Cse1/Cas8 › Cascade subunit CasA/Cse1/Cas8 0.67 50.0 2.85e-01 81.1% 27.1%
4578850 4076.2.1.2 ↗ a+b two layers › L9 N-domain-like › MbtH-like › MbtH-like › PF27096 0.62 54.0 4.84e-01 100.0% 72.0%
3985841 4076.2.1.2 ↗ a+b two layers › L9 N-domain-like › MbtH-like › MbtH-like › PF27096 0.62 54.0 4.41e-01 100.0% 55.0%
4945524 7513.1.1.1 ↗ a/b three-layered sandwiches › CofD-like › CofD-like › CofD-like › CofD 0.58 42.0 2.76e-01 84.9% 71.4%
4091315 304.24.1.1 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_C 0.56 43.0 3.50e-01 86.8% 97.3%
4028554 10.30.1.0 ↗ beta sandwiches › jelly-roll › Latrophilin 1 gal_lectin domain › Latrophilin 1 gal_lectin domain 0.56 39.0 3.37e-01 73.6% 65.5%
3388439 4121.1.1.1 ↗ a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA 0.55 48.0 3.09e-01 100.0% 50.4%
2010233 7590.1.1.2 ↗ a/b three-layered sandwiches › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Piwi 0.55 39.0 2.73e-01 77.4% 97.8%
4886012 2007.1.20.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Dehydratase-like › ILVD_EDD 0.55 40.0 2.48e-01 86.8% 56.9%
3603150 2004.1.1.220 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SWI2_SNF2 0.55 42.0 2.90e-01 92.5% 83.5%
5061831 375.1.1.325 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › OapC 0.54 39.0 3.84e-01 94.3% 71.7%
157297 379.1.1.1 ↗ few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors › Kazal_1 0.53 36.0 3.36e-01 96.2% 52.6%
5057952 375.1.1.325 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › OapC 0.53 40.0 3.89e-01 98.1% 75.4%
D2 medium residues 3-77
PDB
Domain cluster: representative
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3779781 109.4.1.1812 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RYDR_ITPR, RIH_assoc 0.56 48.0 2.72e-01 100.0% 19.3%
4017553 320.1.1.0 ↗ a+b two layers › R3H domain-like › R3H domain › R3H domain 0.52 33.0 3.13e-01 73.3% 49.5%
3743748 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 33.0 3.23e-01 73.3% 54.4%
5000349 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.51 36.0 3.15e-01 74.7% 93.3%
3448910 101.1.2.164 ↗ alpha arrays › HTH › HTH › winged helix domain › TFA2_Winged_2 0.51 41.0 3.78e-01 100.0% 69.0%
3185408 101.1.2.615 ↗ alpha arrays › HTH › HTH › winged helix domain › TFA2_Winged_2, TFA2_E-tether 0.50 39.0 3.68e-01 96.0% 67.4%
4443502 109.4.1.116 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RIH_assoc 0.50 43.0 2.60e-01 100.0% 49.6%
3267490 101.1.2.24 ↗ alpha arrays › HTH › HTH › winged helix domain › MAGE 0.50 42.0 3.10e-01 98.7% 84.7%