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IMGVR_UViG_3300010263_000154-3300010263-Ga0134105_1000027127
Arc-VirIMGVR_UViG_3300010263_000154-3300010263-Ga0134105_1000027127
Identity
- Kingdom:
- archaea
Quality
79.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 36-51_141-265
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01374.24 best | Glyco_hydro_46 | 63.7 | 2.70e-17 | 85.1% | 56.2% |
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1chkA01 | 1.20.141.10 | Mainly Alpha › Up-down Bundle › Chitosanase, subunit A; domain 1 › Chitosanase, subunit A, domain 1 | 0.88 | 80.0 | 7.98e-01 | 96.5% | 92.3% |
| 2d05A02 | 1.20.141.10 | Mainly Alpha › Up-down Bundle › Chitosanase, subunit A; domain 1 › Chitosanase, subunit A, domain 1 | 0.86 | 62.0 | 6.99e-01 | 73.0% | 99.1% |
| 2hvrA03 | 1.10.10.1810 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › RNA ligase | 0.53 | 30.0 | 3.68e-01 | 79.4% | 88.5% |
| 2no4A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.53 | 29.0 | 3.70e-01 | 81.6% | 98.7% |
| 3ztaA00 | 1.10.490.130 | Mainly Alpha › Orthogonal Bundle › Globin-like › | 0.51 | 31.0 | 3.12e-01 | 86.5% | 59.0% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2754916 | 235.1.1.8 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Glyco_hydro_46 | 0.95 | 90.0 | 7.24e-01 | 97.2% | 97.1% |
| 7428 | 235.1.1.8 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Glyco_hydro_46 | 0.87 | 77.0 | 6.13e-01 | 92.2% | 89.6% |
| 4579436 | 1197.1.1.1 ↗ | alpha bundles › Integral membrane glycerol 3-phosphate acyltransferase PlsY › Integral membrane glycerol 3-phosphate acyltransferase PlsY › Integral membrane glycerol 3-phosphate acyltransferase PlsY › G3P_acyltransf | 0.56 | 44.0 | 3.95e-01 | 83.0% | 89.6% |
| 3312398 | 633.4.1.1 ↗ | alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor › PMEI | 0.51 | 40.0 | 3.84e-01 | 83.0% | 92.1% |
D2
medium
residues 52-140
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01374.24 best | Glyco_hydro_46 | 76.7 | 2.80e-21 | 100.0% | 33.3% |
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1chkA02 | 3.30.386.10 | Alpha Beta › 2-Layer Sandwich › Chitosanase; Chain A, domain 2 › Chitosanase, subunit A, domain 2 | 0.92 | 82.0 | 8.05e-01 | 100.0% | 87.4% |
| 1qgiA01 | 3.30.386.10 | Alpha Beta › 2-Layer Sandwich › Chitosanase; Chain A, domain 2 › Chitosanase, subunit A, domain 2 | 0.70 | 66.0 | 5.46e-01 | 100.0% | 63.9% |
| 5g6rB02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.60 | 47.0 | 4.09e-01 | 83.1% | 62.9% |
| 4cybD00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.59 | 47.0 | 3.76e-01 | 84.3% | 81.3% |
| 2vl7A02 | 1.10.275.30 | Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › | 0.56 | 43.0 | 4.05e-01 | 83.1% | 78.2% |
| 2wl8C00 | 1.20.120.900 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Pex19, mPTS binding domain | 0.53 | 44.0 | 4.17e-01 | 92.1% | 83.5% |
| 3d0cB00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.51 | 39.0 | 2.77e-01 | 84.3% | 87.3% |
| 4yg1A00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.51 | 34.0 | 3.73e-01 | 75.3% | 87.5% |
| 1sdiA00 | 1.10.3890.10 | Mainly Alpha › Orthogonal Bundle › YcfC-like › HflD-like | 0.50 | 41.0 | 3.16e-01 | 92.1% | 38.0% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2754916 | 235.1.1.8 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Glyco_hydro_46 | 0.94 | 83.0 | 5.79e-01 | 100.0% | 33.9% |
| 1125597 | 235.1.1.8 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Glyco_hydro_46 | 0.92 | 83.0 | 5.71e-01 | 100.0% | 33.2% |
| 3929907 | 4967.1.1.0 ↗ | alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases | 0.64 | 40.0 | 4.69e-01 | 78.7% | 100.0% |
| 2156962 | 109.2.1.22 ↗ | alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › GlcNAc_2-epim | 0.63 | 45.0 | 2.96e-01 | 75.3% | 39.5% |
| 3376984 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.54 | 44.0 | 2.83e-01 | 89.9% | 30.9% |