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IMGVR_UViG_3300010286_000195-3300010286-Ga0134092_100019328
Arc-VirIMGVR_UViG_3300010286_000195-3300010286-Ga0134092_100019328
Identity
- Kingdom:
- archaea
Quality
89.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-71
Domain cluster:
representative
CATH (31)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7ejoB01 | 3.30.2260.10 | Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary | 0.82 | 67.0 | 6.27e-01 | 88.2% | 100.0% |
| 5undA01 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.77 | 35.0 | 3.94e-01 | 98.5% | 55.6% |
| 5o60I00 | 3.30.70.1730 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein L10, N-terminal RNA-binding domain | 0.75 | 61.0 | 4.97e-01 | 88.2% | 82.5% |
| 7as8L01 | 3.30.70.1730 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein L10, N-terminal RNA-binding domain | 0.67 | 55.0 | 4.69e-01 | 91.2% | 83.0% |
| 1whvA00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.66 | 50.0 | 4.38e-01 | 80.9% | 83.0% |
| 2xf1A00 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.64 | 51.0 | 4.27e-01 | 88.2% | 77.0% |
| 4fw9A01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.64 | 45.0 | 2.95e-01 | 73.5% | 39.0% |
| 7npaA02 | 3.30.70.3340 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.64 | 44.0 | 4.10e-01 | 72.1% | 81.2% |
| 1h0hB01 | 3.30.70.20 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.61 | 42.0 | 3.31e-01 | 73.5% | 89.3% |
| 4iajA00 | 3.30.1490.390 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Protein of unknown function DUF4649 | 0.60 | 46.0 | 4.51e-01 | 86.8% | 85.5% |
| 2xqyA03 | 2.60.40.3190 | Mainly Beta › Sandwich › Immunoglobulin-like › Herpesvirus glycoprotein H, C-terminal domain | 0.60 | 44.0 | 3.56e-01 | 79.4% | 42.1% |
| 1qysA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.58 | 47.0 | 4.31e-01 | 92.6% | 76.1% |
| 3zq5A03 | 3.30.450.270 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PHY domain | 0.57 | 40.0 | 3.15e-01 | 75.0% | 94.1% |
| 4kyzA00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.56 | 45.0 | 3.50e-01 | 92.6% | 41.3% |
| 2jvfA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.56 | 47.0 | 4.25e-01 | 94.1% | 73.4% |
| 2mlgA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 40.0 | 3.90e-01 | 79.4% | 89.6% |
| 7l9pK01 | 3.30.900.10 | Alpha Beta › 2-Layer Sandwich › Cell Cycle, Spindle Assembly Checkpoint Protein; Chain A › HORMA domain | 0.55 | 39.0 | 3.28e-01 | 75.0% | 84.0% |
| 4a0gC03 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.55 | 41.0 | 2.84e-01 | 80.9% | 50.4% |
| 4bwsF00 | 3.30.1490.40 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › GYF domain | 0.55 | 44.0 | 4.44e-01 | 91.2% | 89.6% |
| 2kgfA00 | 1.10.375.10 | Mainly Alpha › Orthogonal Bundle › Human Immunodeficiency Virus Type 1 Capsid Protein › Human Immunodeficiency Virus Type 1 Capsid Protein | 0.55 | 40.0 | 3.27e-01 | 80.9% | 96.4% |
| 2c60A01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.53 | 39.0 | 3.74e-01 | 83.8% | 68.4% |
| 5c54G00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.53 | 45.0 | 3.00e-01 | 98.5% | 95.4% |
| 6pwkA02 | 3.20.20.450 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain | 0.53 | 43.0 | 3.06e-01 | 92.6% | 40.7% |
| 1b1zA02 | 3.10.20.120 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.53 | 41.0 | 3.38e-01 | 88.2% | 60.3% |
| 5j3uA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.52 | 38.0 | 3.32e-01 | 100.0% | 46.0% |
| 1dq3A03 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.52 | 36.0 | 3.33e-01 | 70.6% | 65.5% |
| 4l80D00 | 3.20.20.60 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphoenolpyruvate-binding domains | 0.52 | 43.0 | 2.82e-01 | 95.6% | 76.5% |
| 4r3dA03 | 2.60.120.1680 | Mainly Beta › Sandwich › Jelly Rolls › | 0.52 | 40.0 | 3.27e-01 | 86.8% | 62.0% |
| 1d0nA06 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.52 | 44.0 | 3.67e-01 | 100.0% | 84.3% |
| 1mgpA01 | 3.40.50.10170 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.51 | 41.0 | 3.21e-01 | 89.7% | 68.4% |
| 3lqyA00 | 3.40.50.850 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Isochorismatase-like | 0.51 | 41.0 | 3.10e-01 | 92.6% | 89.3% |
ECOD (62)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3621957 | 304.60.1.2 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein L10-like › Ribosomal protein L10-like › Ribosomal_L10 | 0.82 | 67.0 | 4.73e-01 | 88.2% | 53.3% |
| 3581912 | 304.60.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein L10-like › Ribosomal protein L10-like | 0.82 | 67.0 | 4.78e-01 | 88.2% | 55.8% |
| 3926562 | 304.60.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein L10-like › Ribosomal protein L10-like | 0.81 | 66.0 | 4.59e-01 | 88.2% | 49.1% |
| 4491887 | 304.60.1.8 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein L10-like › Ribosomal protein L10-like › Ribosomal_L10, PF27436 | 0.81 | 67.0 | 4.88e-01 | 88.2% | 61.8% |
| 4263327 | 304.60.1.8 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein L10-like › Ribosomal protein L10-like › Ribosomal_L10, PF27436 | 0.81 | 66.0 | 4.90e-01 | 88.2% | 66.1% |
| 4609818 | 304.60.1.2 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein L10-like › Ribosomal protein L10-like › Ribosomal_L10 | 0.80 | 67.0 | 4.98e-01 | 89.7% | 66.3% |
| 4654857 | 304.60.1.8 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein L10-like › Ribosomal protein L10-like › Ribosomal_L10, PF27436 | 0.80 | 66.0 | 4.83e-01 | 88.2% | 62.4% |
| 4287252 | 304.60.1.2 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein L10-like › Ribosomal protein L10-like › Ribosomal_L10 | 0.80 | 65.0 | 4.79e-01 | 88.2% | 60.6% |
| 4088995 | 304.60.1.2 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein L10-like › Ribosomal protein L10-like › Ribosomal_L10 | 0.80 | 65.0 | 4.83e-01 | 88.2% | 64.2% |
| 4666950 | 304.60.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein L10-like › Ribosomal protein L10-like | 0.80 | 65.0 | 4.78e-01 | 88.2% | 62.4% |
| 4593901 | 304.60.1.2 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein L10-like › Ribosomal protein L10-like › Ribosomal_L10 | 0.79 | 67.0 | 4.67e-01 | 89.7% | 55.4% |
| 4322200 | 304.60.1.2 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein L10-like › Ribosomal protein L10-like › Ribosomal_L10 | 0.79 | 65.0 | 4.76e-01 | 88.2% | 62.9% |
| 4413861 | 304.60.1.8 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein L10-like › Ribosomal protein L10-like › Ribosomal_L10, PF27436 | 0.79 | 64.0 | 4.89e-01 | 88.2% | 68.4% |
| 4445437 | 304.60.1.8 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein L10-like › Ribosomal protein L10-like › Ribosomal_L10, PF27436 | 0.79 | 64.0 | 4.71e-01 | 88.2% | 60.6% |
| 4340306 | 304.60.1.8 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein L10-like › Ribosomal protein L10-like › Ribosomal_L10, PF27436 | 0.79 | 64.0 | 4.82e-01 | 88.2% | 66.9% |
| 4396118 | 304.60.1.2 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein L10-like › Ribosomal protein L10-like › Ribosomal_L10 | 0.79 | 65.0 | 4.83e-01 | 88.2% | 66.9% |
| 4514209 | 304.60.1.2 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein L10-like › Ribosomal protein L10-like › Ribosomal_L10 | 0.79 | 64.0 | 4.85e-01 | 88.2% | 69.7% |
| 4233978 | 304.60.1.2 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein L10-like › Ribosomal protein L10-like › Ribosomal_L10 | 0.78 | 64.0 | 4.84e-01 | 88.2% | 69.0% |
| 3410191 | 304.60.1.2 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein L10-like › Ribosomal protein L10-like › Ribosomal_L10 | 0.78 | 64.0 | 4.42e-01 | 88.2% | 48.8% |
| 4494979 | 304.60.1.2 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein L10-like › Ribosomal protein L10-like › Ribosomal_L10 | 0.78 | 63.0 | 4.69e-01 | 88.2% | 62.9% |
| 3233716 | 304.60.1.2 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein L10-like › Ribosomal protein L10-like › Ribosomal_L10 | 0.78 | 63.0 | 4.58e-01 | 88.2% | 57.1% |
| 3552527 | 304.60.1.2 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein L10-like › Ribosomal protein L10-like › Ribosomal_L10 | 0.78 | 63.0 | 4.39e-01 | 88.2% | 48.4% |
| 3950224 | 304.60.1.8 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein L10-like › Ribosomal protein L10-like › Ribosomal_L10, PF27436 | 0.78 | 63.0 | 4.64e-01 | 88.2% | 60.0% |
| 4680012 | 304.60.1.8 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein L10-like › Ribosomal protein L10-like › Ribosomal_L10, PF27436 | 0.78 | 63.0 | 4.63e-01 | 88.2% | 64.0% |
| 5062414 | 304.60.1.2 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein L10-like › Ribosomal protein L10-like › Ribosomal_L10 | 0.77 | 65.0 | 4.72e-01 | 91.2% | 61.7% |
| 3500144 | 304.60.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein L10-like › Ribosomal protein L10-like | 0.77 | 62.0 | 4.38e-01 | 88.2% | 52.7% |
| 5042248 | 304.60.1.2 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein L10-like › Ribosomal protein L10-like › Ribosomal_L10 | 0.76 | 65.0 | 4.56e-01 | 91.2% | 54.9% |
| 3489101 | 304.60.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein L10-like › Ribosomal protein L10-like | 0.76 | 62.0 | 4.64e-01 | 89.7% | 66.7% |
| 3691813 | 304.60.1.9 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein L10-like › Ribosomal protein L10-like › PF28227 | 0.73 | 59.0 | 4.17e-01 | 88.2% | 73.2% |
| 5029894 | 2004.1.2.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › PEP carboxykinase catalytic C-terminal domain | 0.71 | 51.0 | 3.83e-01 | 76.5% | 37.6% |
| 3705856 | 4121.1.1.1 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA | 0.68 | 52.0 | 3.36e-01 | 82.4% | 20.0% |
| 4931464 | 822.3.1.0 ↗ | a+b two layers › GYF/BRK domain-like › conserved domain protein SP_1775 › conserved domain protein SP_1775 | 0.67 | 55.0 | 5.36e-01 | 88.2% | 94.7% |
| 3989311 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.64 | 44.0 | 3.58e-01 | 72.1% | 77.7% |
| 3205036 | 4081.1.1.2 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT | 0.62 | 44.0 | 2.99e-01 | 73.5% | 21.6% |
| 3637401 | 4081.1.1.8 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT_2 | 0.62 | 44.0 | 3.12e-01 | 75.0% | 24.1% |
| 3252861 | 4081.1.1.2 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT | 0.61 | 44.0 | 3.10e-01 | 75.0% | 24.2% |
| 3962617 | 4081.1.1.2 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT | 0.60 | 44.0 | 3.18e-01 | 77.9% | 25.9% |
| 5072041 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.59 | 41.0 | 3.38e-01 | 73.5% | 79.2% |
| 3187789 | 2002.1.1.111 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › HpcH_HpaI | 0.59 | 50.0 | 3.27e-01 | 97.1% | 79.7% |
| 3875549 | 4081.1.1.2 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT | 0.59 | 42.0 | 3.10e-01 | 76.5% | 26.7% |
| 3495764 | 4081.1.1.2 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT | 0.59 | 43.0 | 3.20e-01 | 77.9% | 29.2% |
| 3258276 | 4081.1.1.2 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT | 0.59 | 42.0 | 2.98e-01 | 76.5% | 24.0% |
| 3267853 | 4081.1.1.2 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT | 0.59 | 42.0 | 2.95e-01 | 76.5% | 23.2% |
| 4488855 | 275.1.1.5 ↗ | a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › Arc_PepC | 0.58 | 39.0 | 3.72e-01 | 72.1% | 57.6% |
| 3907235 | 4081.1.1.2 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT | 0.56 | 42.0 | 2.96e-01 | 80.9% | 44.4% |
| 3833836 | 109.4.1.619 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DYW_deaminase | 0.56 | 47.0 | 3.83e-01 | 98.5% | 81.3% |
| 3420651 | 109.4.1.1521 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, DYW_deaminase, Eplus_motif, E_motif | 0.56 | 43.0 | 2.81e-01 | 86.8% | 39.4% |
| 2439674 | 2002.1.1.300 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › HpcH_HpaI, C-C_Bond_Lyase | 0.55 | 46.0 | 3.15e-01 | 97.1% | 82.8% |
| 2126757 | 170.2.1.1 ↗ | alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein N-terminal domain › Retrovirus capsid protein N-terminal domain › Gag_p24 | 0.55 | 40.0 | 3.27e-01 | 80.9% | 96.4% |
| 3721072 | 109.3.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat | 0.54 | 41.0 | 3.10e-01 | 80.9% | 53.3% |
| 5038375 | 4081.1.1.2 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT | 0.54 | 38.0 | 2.82e-01 | 75.0% | 26.0% |
| 3528628 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.54 | 38.0 | 2.54e-01 | 75.0% | 73.3% |
| 3508063 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.53 | 32.0 | 3.46e-01 | 91.2% | 70.0% |
| 4514271 | 109.4.1.1297 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TIMELESS, PF27570 | 0.53 | 45.0 | 2.58e-01 | 100.0% | 27.0% |
| 3839900 | 2004.1.1.220 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SWI2_SNF2 | 0.52 | 43.0 | 2.96e-01 | 94.1% | 40.4% |
| 3609261 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 38.0 | 3.35e-01 | 79.4% | 62.9% |
| 4016019 | 109.3.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat | 0.51 | 44.0 | 3.07e-01 | 100.0% | 69.8% |
| 3996262 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.51 | 35.0 | 3.52e-01 | 89.7% | 70.0% |
| 138562 | 7561.1.1.1 ↗ | a/b three-layered sandwiches › Isochorismatase-like hydrolases › Isochorismatase-like hydrolases › Isochorismatase-like hydrolases › Isochorismatase | 0.51 | 41.0 | 3.10e-01 | 92.6% | 89.3% |
| 3723416 | 212.1.1.12 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › UPF0029 | 0.51 | 34.0 | 2.87e-01 | 70.6% | 57.2% |
| 3680094 | 2485.1.1.3 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Glutaredoxin | 0.51 | 33.0 | 3.16e-01 | 89.7% | 56.2% |
| 5076422 | 873.1.1.1 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › V4R | 0.50 | 40.0 | 3.09e-01 | 89.7% | 67.1% |