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IMGVR_UViG_3300010310_000334-3300010310-Ga0116235_13206601
Arc-VirIMGVR_UViG_3300010310_000334-3300010310-Ga0116235_13206601
Identity
- Kingdom:
- archaea
Quality
79.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-26
Domain cluster:
representative
CATH (23)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5ucoA02 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.64 | 44.0 | 2.94e-01 | 100.0% | 30.7% |
| 1fouA02 | 2.40.500.10 | Mainly Beta › Beta Barrel › Upper collar protein gp10 (connector protein) fold › Upper collar protein gp10 (connector protein) | 0.61 | 38.0 | 2.78e-01 | 100.0% | 59.8% |
| 1s7iA00 | 3.30.70.1060 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Dimeric alpha+beta barrel | 0.60 | 42.0 | 2.78e-01 | 73.1% | 16.1% |
| 7sebA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.60 | 45.0 | 3.91e-01 | 80.8% | 77.3% |
| 2jraA01 | 2.10.70.10 | Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 | 0.60 | 42.0 | 3.96e-01 | 92.3% | 66.7% |
| 6mfxA02 | 3.30.559.10 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain | 0.59 | 41.0 | 2.75e-01 | 100.0% | 23.7% |
| 1zcdA00 | 1.20.1530.10 | Mainly Alpha › Up-down Bundle › Na+/H+ antiporter like fold › Na+/H+ antiporter like domain | 0.56 | 39.0 | 2.23e-01 | 73.1% | 5.3% |
| 1q8iA04 | 3.90.1600.10 | Alpha Beta › Alpha-Beta Complex › Palm domain of DNA polymerase › B family DNA polymerase, palm domain | 0.56 | 41.0 | 2.53e-01 | 92.3% | 18.7% |
| 6oyfA01 | 3.30.559.10 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain | 0.54 | 42.0 | 2.75e-01 | 100.0% | 21.9% |
| 2innB00 | 1.10.620.20 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A | 0.53 | 36.0 | 2.02e-01 | 73.1% | 22.5% |
| 1zkkB00 | 2.170.270.10 | Mainly Beta › Beta Complex › Beta-clip-like › SET domain | 0.53 | 35.0 | 2.36e-01 | 96.2% | 49.7% |
| 1np6A02 | 2.20.25.120 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.53 | 37.0 | 3.72e-01 | 84.6% | 85.2% |
| 2jugA01 | 1.10.10.1830 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Non-ribosomal peptide synthase, adenylation domain | 0.52 | 36.0 | 3.09e-01 | 73.1% | 34.5% |
| 1b35B00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.52 | 37.0 | 2.23e-01 | 73.1% | 7.5% |
| 2cttA01 | 2.10.230.10 | Mainly Beta › Ribbon › Chaperone, DNAj Protein; Chain A › Heat shock protein DnaJ, cysteine-rich domain | 0.52 | 42.0 | 3.20e-01 | 76.9% | 40.6% |
| 3qthB00 | 1.20.120.450 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain | 0.52 | 35.0 | 2.44e-01 | 100.0% | 36.6% |
| 2cs7A00 | 3.10.50.90 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.52 | 38.0 | 3.30e-01 | 96.2% | 50.9% |
| 1qmgB01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.51 | 35.0 | 2.22e-01 | 96.2% | 25.5% |
| 3cj1A02 | 3.30.420.150 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Exopolyphosphatase. Domain 2 | 0.51 | 37.0 | 2.23e-01 | 88.5% | 28.5% |
| 3hl0A01 | 3.40.50.1970 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.50 | 35.0 | 2.35e-01 | 96.2% | 42.1% |
| 3mpxA02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.50 | 36.0 | 2.68e-01 | 100.0% | 50.5% |
| 2memA00 | 3.90.1150.190 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › SLED domain | 0.50 | 36.0 | 2.56e-01 | 100.0% | 26.9% |
| 1cl8A00 | 3.40.580.10 | Alpha Beta › 3-Layer(aba) Sandwich › ECO RI Endonuclease; Chain A › Eco RI Endonuclease, subunit A | 0.50 | 36.0 | 2.21e-01 | 88.5% | 10.0% |
ECOD (19)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5034274 | 4951.1.1.0 ↗ | alpha arrays › inserted helical subdomain in bacterial RNA-polymerase beta-prime subunit › inserted helical subdomain in bacterial RNA-polymerase beta-prime subunit › inserted helical subdomain in bacterial RNA-polymerase beta-prime subunit | 0.65 | 48.0 | 3.88e-01 | 76.9% | 56.7% |
| 2514619 | 4081.1.1.2 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT | 0.64 | 45.0 | 2.78e-01 | 100.0% | 92.5% |
| 4968561 | 2004.1.1.97 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MobB | 0.62 | 42.0 | 2.73e-01 | 96.2% | 15.1% |
| 3839782 | 2004.1.1.58 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mg_chelatase | 0.61 | 45.0 | 2.70e-01 | 96.2% | 24.2% |
| 4978955 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.61 | 42.0 | 2.95e-01 | 100.0% | 26.2% |
| None | — | 0.61 | 41.0 | 2.69e-01 | 92.3% | 16.4% | |
| 5079449 | 2004.1.1.97 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MobB | 0.59 | 40.0 | 2.64e-01 | 96.2% | 16.5% |
| 4997643 | 2004.1.1.97 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MobB | 0.59 | 41.0 | 2.59e-01 | 96.2% | 13.3% |
| 5032304 | 2004.1.1.97 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MobB | 0.58 | 40.0 | 2.49e-01 | 92.3% | 11.7% |
| 3591791 | 60.1.2.1 ↗ | beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain › Ku | 0.58 | 40.0 | 2.32e-01 | 92.3% | 28.9% |
| 4009761 | 3454.1.1.2 ↗ | beta barrels › GspC HR domain/PilP-like › GspC HR domain/PilP-like › GspC HR domain/PilP-like › T2SSC | 0.57 | 42.0 | 3.37e-01 | 100.0% | 44.6% |
| 4084910 | 304.4.1.3 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › YCII | 0.57 | 39.0 | 2.66e-01 | 73.1% | 16.7% |
| 4935046 | 2004.1.1.97 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MobB | 0.57 | 39.0 | 2.75e-01 | 88.5% | 17.7% |
| 3669363 | 11.1.1.389 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › EDR2_C | 0.56 | 36.0 | 2.63e-01 | 100.0% | 39.2% |
| 3486241 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.51 | 37.0 | 3.11e-01 | 76.9% | 33.3% |
| 1155554 | 2492.1.1.5 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › AICARFT_IMPCHas | 0.51 | 38.0 | 2.40e-01 | 76.9% | 68.0% |
| 4002698 | 2003.1.3.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO | 0.51 | 36.0 | 2.32e-01 | 88.5% | 13.7% |
| 3573586 | 70.3.1.2 ↗ | beta barrels › beta-clip › SET domain-like › SET domain-like › zf-MYND | 0.50 | 36.0 | 2.19e-01 | 96.2% | 17.0% |
| 3254236 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.50 | 38.0 | 2.90e-01 | 100.0% | 36.2% |