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IMGVR_UViG_3300010327_000704-3300010327-Ga0116246_1000102121

Arc-Vir

IMGVR_UViG_3300010327_000704-3300010327-Ga0116246_1000102121

Identity

Kingdom:
archaea

Quality

75.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-136
PDB
Domain cluster: representative
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.64 26.0 3.21e-01 91.8% 56.6%
2zbbA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.61 34.0 4.36e-01 89.6% 91.4%
1pwkA00 3.30.740.10 Alpha Beta › 2-Layer Sandwich › Protein Inhibitor Of Neuronal Nitric Oxide Synthase › Protein Inhibitor Of Neuronal Nitric Oxide Synthase; 0.60 29.0 3.38e-01 91.8% 63.7%
2mcaA00 2.60.40.2890 Mainly Beta › Sandwich › Immunoglobulin-like › Domain of unknown function DUF5300 0.60 30.0 3.44e-01 97.8% 63.1%
4b7lA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 32.0 3.60e-01 85.1% 68.0%
2blfA02 2.60.40.650 Mainly Beta › Sandwich › Immunoglobulin-like › 0.59 32.0 3.44e-01 85.1% 59.6%
1dq3A03 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.58 34.0 3.98e-01 100.0% 85.1%
3q48A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 32.0 4.01e-01 100.0% 90.4%
1k8kD01 3.30.1460.20 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.55 36.0 3.48e-01 92.5% 58.3%
4jb9H01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 36.0 3.71e-01 84.3% 68.7%
3go5A01 2.40.50.330 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.53 24.0 3.12e-01 97.8% 74.6%
3hlzB01 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.53 36.0 3.56e-01 91.8% 65.0%
2htdB00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 39.0 4.03e-01 98.5% 83.1%
4jzjC02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 29.0 3.17e-01 84.3% 65.4%
4pjeE01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 30.0 3.31e-01 83.6% 69.4%
2ex5A00 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.52 31.0 2.71e-01 88.1% 37.7%
1af5A00 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.51 31.0 3.23e-01 100.0% 63.5%
4ywzB00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.50 36.0 3.54e-01 92.5% 67.8%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3512272 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.58 28.0 3.51e-01 85.1% 77.3%
4944535 12.3.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.56 49.0 3.85e-01 95.5% 77.9%
4022673 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 28.0 3.23e-01 85.8% 63.2%
3965192 1.1.13.67 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › DUF2460 0.55 44.0 4.70e-01 99.3% 97.4%
3264438 12.3.1.46 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › ComC_SSD 0.55 47.0 3.83e-01 94.8% 87.8%
4969269 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 29.0 3.29e-01 85.8% 66.0%
3258896 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 28.0 3.24e-01 92.5% 67.4%
1286181 881.1.1.7 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › DUF3805 0.53 36.0 3.60e-01 91.8% 66.9%
3423873 11.1.1.214 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Pur_ac_phosph_N 0.53 33.0 3.46e-01 85.8% 68.3%
3789933 11.10.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.52 33.0 3.69e-01 85.1% 81.9%
5044404 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 29.0 3.23e-01 85.1% 67.6%
4933938 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 35.0 3.63e-01 98.5% 73.6%
3967781 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.51 39.0 3.73e-01 97.8% 67.5%
None — 0.51 39.0 3.79e-01 88.8% 72.4%
4029857 10.12.1.62 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › PMI_typeI_cat 0.51 43.0 2.93e-01 91.8% 71.1%
4360808 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.51 32.0 3.54e-01 92.5% 80.6%
4665318 304.102.1.3 ↗ a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_1 0.50 43.0 3.54e-01 94.8% 75.6%
D2 high residues 167-253
PDB
Domain cluster: rep: IMGVR_UViG_3300019376_000688-3300019376-Ga0187899_100218772__D21-119