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IMGVR_UViG_3300010327_000788-3300010327-Ga0116246_1000251311

Arc-Vir

IMGVR_UViG_3300010327_000788-3300010327-Ga0116246_1000251311

Quality

67.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 33-93
PDB
Domain cluster: representative
CATH (52)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1wmdA02 2.60.120.380 Mainly Beta › Sandwich › Jelly Rolls › 0.72 62.0 5.08e-01 100.0% 97.4%
3qdhA01 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.70 61.0 4.59e-01 100.0% 55.1%
8gsxA01 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.69 59.0 4.51e-01 100.0% 60.3%
4kbxA01 2.40.37.30 Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › 0.68 58.0 4.00e-01 100.0% 32.3%
1qw9A01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.67 58.0 4.57e-01 100.0% 62.4%
1nqjB00 2.60.120.380 Mainly Beta › Sandwich › Jelly Rolls › 0.67 57.0 4.76e-01 100.0% 82.5%
1wzaA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.67 54.0 5.00e-01 100.0% 70.9%
2vbkA00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.66 56.0 3.33e-01 100.0% 13.5%
4psrA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.66 55.0 4.55e-01 100.0% 68.9%
4fkeA01 2.60.40.1730 Mainly Beta › Sandwich › Immunoglobulin-like › tricorn interacting facor f3 domain 0.65 56.0 3.88e-01 100.0% 33.2%
7o0eA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.65 56.0 5.11e-01 100.0% 78.3%
2vm9A02 2.60.40.2080 Mainly Beta › Sandwich › Immunoglobulin-like › 0.65 54.0 4.78e-01 100.0% 87.8%
1ig3A01 2.60.120.320 Mainly Beta › Sandwich › Jelly Rolls › Thiamin pyrophosphokinase, thiamin-binding domain 0.65 55.0 4.82e-01 100.0% 85.6%
3l4yA05 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.64 54.0 4.25e-01 98.4% 55.8%
2ccvA00 2.60.40.2080 Mainly Beta › Sandwich › Immunoglobulin-like › 0.64 53.0 4.67e-01 100.0% 93.9%
1rgxA02 2.60.40.4230 Mainly Beta › Sandwich › Immunoglobulin-like › Resistin head domain 0.63 48.0 4.78e-01 100.0% 82.8%
2vtfA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.63 53.0 3.93e-01 100.0% 96.0%
7kbrC01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.63 50.0 4.05e-01 93.4% 77.6%
2vrqA01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.62 52.0 4.22e-01 100.0% 60.6%
4fx5A01 2.60.40.3670 Mainly Beta › Sandwich › Immunoglobulin-like › 0.62 52.0 4.10e-01 100.0% 52.8%
5ikuA01 2.60.120.380 Mainly Beta › Sandwich › Jelly Rolls › 0.62 51.0 4.46e-01 100.0% 91.3%
1e5bA00 2.60.40.290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.61 50.0 4.60e-01 100.0% 97.7%
1x99A00 2.60.270.20 Mainly Beta › Sandwich › Mutm (Fpg) Protein; Chain: A, domain 2 › Cytolysin/lectin 0.60 47.0 3.63e-01 88.5% 37.9%
4dimA03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.60 46.0 3.28e-01 88.5% 35.5%
3g7dA03 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.59 50.0 4.11e-01 100.0% 72.6%
5tfmA01 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.59 50.0 4.36e-01 100.0% 80.6%
3l81A02 2.60.40.1170 Mainly Beta › Sandwich › Immunoglobulin-like › Mu homology domain, subdomain B 0.59 49.0 4.17e-01 100.0% 67.3%
4liqE04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 48.0 4.28e-01 100.0% 83.7%
2rikA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 50.0 4.46e-01 100.0% 82.6%
3b43A06 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 49.0 4.34e-01 100.0% 83.2%
2k1mA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 49.0 4.32e-01 100.0% 81.1%
6vt2A01 2.60.40.4140 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 45.0 3.77e-01 90.2% 78.6%
3lcyA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 49.0 4.28e-01 100.0% 82.5%
4fcaA01 2.60.120.1250 Mainly Beta › Sandwich › Jelly Rolls › Peptidase M60, enhancin-like domain 1 0.57 46.0 4.04e-01 100.0% 84.4%
1wkiA01 3.90.1170.10 Alpha Beta › Alpha-Beta Complex › Aldehyde Oxidoreductase; domain 3 › Ribosomal protein L16/L10 0.57 43.0 3.73e-01 88.5% 88.1%
2okxA03 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.56 46.0 3.41e-01 100.0% 32.6%
2osxA01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.56 41.0 3.69e-01 85.2% 88.9%
1bdsA00 2.20.20.10 Mainly Beta › Single Sheet › Anthopleurin-A › Anthopleurin-A 0.56 31.0 3.45e-01 100.0% 72.1%
2y23A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 43.0 3.80e-01 93.4% 70.2%
2wb7A02 2.60.40.2050 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 46.0 3.58e-01 100.0% 58.7%
4kktA01 2.40.420.20 Mainly Beta › Beta Barrel › conserved putative lor/sdh protein from methanococcus maripaludis s2 fold › 0.55 46.0 4.07e-01 98.4% 72.9%
3vsmA03 2.60.40.4340 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 39.0 3.56e-01 80.3% 74.5%
7esdB01 2.60.40.350 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 43.0 3.93e-01 95.1% 84.8%
4bi3A01 3.90.1720.80 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › 0.55 47.0 4.17e-01 100.0% 69.2%
2qf4A01 2.40.10.340 Mainly Beta › Beta Barrel › Thrombin, subunit H › Rod shape-determining protein MreC, domain 1 0.55 45.0 4.23e-01 100.0% 89.9%
3ne5B01 2.40.420.20 Mainly Beta › Beta Barrel › conserved putative lor/sdh protein from methanococcus maripaludis s2 fold › 0.54 44.0 4.06e-01 98.4% 77.9%
2xy1A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 43.0 3.91e-01 100.0% 85.6%
3zugB02 2.40.30.30 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like 0.53 42.0 3.50e-01 100.0% 68.3%
6kliA01 2.60.40.420 Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins 0.53 45.0 3.22e-01 100.0% 33.7%
1sgvA02 2.30.130.10 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain 0.52 38.0 3.83e-01 82.0% 81.0%
4enzA03 2.60.40.420 Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins 0.51 41.0 3.06e-01 100.0% 59.8%
1zunB03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.50 37.0 3.26e-01 86.9% 88.7%
ECOD (60)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3820928 4178.1.1.0 beta sandwiches › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain 0.72 62.0 4.70e-01 98.4% 58.0%
3924218 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.72 62.0 5.12e-01 100.0% 93.0%
3604177 3386.2.1.0 beta sandwiches › gp9 C-terminal domain-like › gp10 domain 2 and domain 3 › gp10 domain 2 and domain 3 0.70 62.0 5.97e-01 100.0% 98.6%
5035337 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.69 54.0 5.31e-01 100.0% 77.9%
5042048 10.2.1.0 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.69 59.0 4.17e-01 100.0% 32.8%
5003891 4081.1.1.0 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related 0.68 59.0 4.36e-01 100.0% 42.9%
5047633 10.1.2.183 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) › PPC 0.68 59.0 5.00e-01 100.0% 91.4%
1870637 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.68 58.0 5.12e-01 100.0% 73.7%
3989692 4081.1.1.12 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › DUF2207 0.67 57.0 4.03e-01 100.0% 40.5%
4558617 12.6.1.3 beta sandwiches › Glycosyl hydrolase domain-like › Glycoside hydrolase family 127 middle domain-related › Glycoside hydrolase family 127 middle domain-related › Bac_rhamnosid_C 0.67 50.0 4.60e-01 100.0% 61.3%
5053995 11.1.5.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.66 57.0 5.31e-01 100.0% 77.3%
184925 11.21.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domain in tailspike protein › Ig-like domain in tailspike protein › Tailspike_C 0.66 56.0 5.36e-01 100.0% 97.3%
5076974 12.1.1.34 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Glyco_hydro38C2 0.66 57.0 5.08e-01 100.0% 75.6%
3580256 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.65 56.0 4.90e-01 100.0% 73.7%
3590148 11.1.5.53 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › GBS104-like_Ig 0.64 54.0 3.89e-01 100.0% 37.0%
4682726 4182.1.1.0 beta sandwiches › Agglutinin HPA-like › Agglutinin HPA-like › Agglutinin HPA-like 0.64 56.0 5.37e-01 100.0% 91.4%
5059260 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.64 54.0 4.57e-01 100.0% 83.6%
1588492 4178.1.1.0 beta sandwiches › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain 0.64 54.0 4.23e-01 98.4% 55.1%
3779515 11.1.5.27 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › A2M_recep 0.64 55.0 4.17e-01 100.0% 44.5%
8624 929.1.1.1 beta duplicates or obligate multimers › Resistin › Resistin › Resistin › Resistin 0.64 49.0 4.44e-01 100.0% 60.7%
4336899 10.4.1.0 beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.63 54.0 4.60e-01 100.0% 84.8%
3562774 12.5.1.0 beta sandwiches › Glycosyl hydrolase domain-like › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related 0.63 53.0 4.07e-01 100.0% 54.2%
3500032 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.62 54.0 4.41e-01 100.0% 76.7%
5046041 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.62 54.0 4.35e-01 100.0% 93.6%
3870891 929.1.1.1 beta duplicates or obligate multimers › Resistin › Resistin › Resistin › Resistin 0.61 49.0 4.47e-01 100.0% 65.9%
5069422 206.1.3.2 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › GARS_A 0.61 53.0 3.23e-01 100.0% 16.5%
3530838 4182.1.1.7 beta sandwiches › Agglutinin HPA-like › Agglutinin HPA-like › Agglutinin HPA-like › Mucin2_WxxW 0.61 52.0 4.73e-01 100.0% 94.1%
3879988 4081.1.1.2 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT 0.61 51.0 3.64e-01 100.0% 40.9%
4954879 11.1.5.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.61 52.0 4.24e-01 100.0% 56.7%
3481360 12.5.1.0 beta sandwiches › Glycosyl hydrolase domain-like › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related 0.60 49.0 3.82e-01 100.0% 49.0%
3289729 12.1.1.34 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Glyco_hydro38C2 0.59 50.0 4.29e-01 100.0% 63.8%
4327708 11.1.5.85 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › PFF1_C 0.59 51.0 4.29e-01 100.0% 61.1%
3379145 11.1.5.29 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Sec23_BS 0.59 51.0 3.89e-01 100.0% 48.0%
3653116 11.1.1.235 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3_6 0.59 48.0 3.87e-01 93.4% 70.4%
4276139 11.1.5.85 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › PFF1_C 0.58 50.0 3.90e-01 100.0% 46.4%
3519988 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.58 48.0 4.13e-01 100.0% 92.7%
4867952 11.1.1.292 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › GspA_SrpA_N 0.58 48.0 3.95e-01 100.0% 78.1%
3389649 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 49.0 4.10e-01 100.0% 72.2%
3690144 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 49.0 4.09e-01 100.0% 83.5%
3923724 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 49.0 4.35e-01 100.0% 84.2%
5083665 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.57 47.0 4.22e-01 100.0% 69.5%
3503687 11.1.1.97 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.57 48.0 4.27e-01 100.0% 82.1%
5083331 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 46.0 3.89e-01 100.0% 85.0%
4384734 1.1.9.10 beta barrels › cradle loop barrel › RIFT-related › PUA domain › TruB_C 0.56 43.0 4.25e-01 85.2% 87.7%
4968597 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 46.0 3.99e-01 100.0% 82.7%
4157251 3943.1.1.0 beta sandwiches › Flagellar hook-associated protein 1 beta-sandwich domains › Flagellar hook-associated protein 1 beta-sandwich domains › Flagellar hook-associated protein 1 beta-sandwich domains 0.56 38.0 3.62e-01 72.1% 77.3%
1498219 10.32.1.79 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › RhaB_D2 0.56 46.0 3.46e-01 100.0% 34.8%
4000174 10.7.1.0 beta sandwiches › jelly-roll › Hypothetical protein TM1070 › Hypothetical protein TM1070 0.56 46.0 3.95e-01 100.0% 59.1%
3544039 11.2.1.19 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › DUF3657 0.56 46.0 2.99e-01 100.0% 26.3%
1005531 12.2.1.2 beta sandwiches › Glycosyl hydrolase domain-like › Hyaluronate lyase-like, C-terminal domain › Hyaluronate lyase-like, C-terminal domain › Baculo_E66 0.55 39.0 3.54e-01 80.3% 72.9%
3785848 11.1.1.577 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PFF1_C 0.55 45.0 3.56e-01 100.0% 76.7%
3915544 11.1.1.97 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.55 45.0 4.05e-01 100.0% 81.1%
4600663 206.1.3.19 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › Dala_Dala_lig_C 0.55 43.0 3.13e-01 96.7% 26.8%
4469793 1.1.8.5 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.54 42.0 3.98e-01 88.5% 94.7%
5038607 325.1.1.2 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › CO dehydrogenase molybdoprotein N-domain-like › Biotin_carb_C 0.53 40.0 3.25e-01 90.2% 54.5%
4175496 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.53 39.0 4.02e-01 83.6% 91.4%
3712979 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 44.0 3.75e-01 100.0% 83.6%
185264 222.1.1.19 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › FlgA_HD-like 0.53 31.0 3.04e-01 88.5% 52.2%
3293595 3156.1.1.8 beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related › Cu-oxidase_2 0.52 45.0 3.55e-01 100.0% 51.1%
3415303 11.1.1.97 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.50 41.0 3.61e-01 100.0% 69.5%