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IMGVR_UViG_3300010332_000012-3300010332-Ga0116200_1000012410
Arc-VirIMGVR_UViG_3300010332_000012-3300010332-Ga0116200_1000012410
Identity
- Kingdom:
- archaea
Quality
70.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 98-154
Domain cluster:
representative
CATH (45)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1e7lA02 | 1.10.720.10 | Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › | 0.78 | 66.0 | 6.69e-01 | 98.2% | 96.4% |
| 1rm6B02 | 3.30.390.50 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain | 0.69 | 48.0 | 3.92e-01 | 100.0% | 39.3% |
| 2zttA00 | 6.10.140.720 | Special › Helix non-globular › Helix Hairpins › | 0.67 | 47.0 | 4.34e-01 | 75.4% | 57.5% |
| 1wojA00 | 3.90.1740.10 | Alpha Beta › Alpha-Beta Complex › 2',3'-cyclic nucleotide 3'-phosphodiesterase fold › 2',3'-cyclic nucleotide 3'-phosphodiesterase superfamily | 0.66 | 43.0 | 2.96e-01 | 100.0% | 18.7% |
| 3djaA01 | 1.20.920.70 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › | 0.66 | 45.0 | 3.40e-01 | 71.9% | 50.3% |
| 3t6pA02 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.66 | 45.0 | 4.30e-01 | 71.9% | 78.8% |
| 6ldiF01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.65 | 47.0 | 3.98e-01 | 100.0% | 45.8% |
| 2wvxA01 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.64 | 56.0 | 3.52e-01 | 98.2% | 89.3% |
| 1bh9B00 | 1.10.20.10 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A | 0.64 | 45.0 | 3.94e-01 | 93.0% | 48.3% |
| 2dk4A00 | 4.10.280.110 | Few Secondary Structures › Irregular › MYOD Basic-Helix-Loop-Helix Domain, subunit B › Pre-mRNA processing factor 4 domain | 0.63 | 53.0 | 4.82e-01 | 98.2% | 71.1% |
| 2g8lB01 | 1.10.8.380 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Uncharacterised protein PF01937, DUF89, domain 1 | 0.62 | 42.0 | 4.00e-01 | 70.2% | 92.5% |
| 1t33A02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.61 | 54.0 | 3.94e-01 | 100.0% | 74.7% |
| 4eekA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.61 | 42.0 | 4.02e-01 | 71.9% | 83.3% |
| 2m7bA00 | 1.10.10.1920 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.60 | 42.0 | 3.83e-01 | 87.7% | 54.5% |
| 3iruA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.60 | 41.0 | 3.69e-01 | 70.2% | 75.6% |
| 5uaiA01 | 3.40.50.170 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Formyl transferase, N-terminal domain | 0.60 | 49.0 | 3.50e-01 | 100.0% | 86.4% |
| 3rfwA01 | 1.10.8.1040 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.60 | 48.0 | 4.72e-01 | 96.5% | 82.0% |
| 4pqgA03 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.60 | 51.0 | 3.71e-01 | 100.0% | 70.1% |
| 1fs0G02 | 1.10.287.80 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain | 0.59 | 40.0 | 3.44e-01 | 87.7% | 44.9% |
| 3keyA01 | 1.10.10.1080 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Stn1, N-terminal wHTH domain | 0.59 | 49.0 | 4.31e-01 | 100.0% | 60.9% |
| 3nbiA01 | 1.10.8.1020 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › RecQ-mediated genome instability protein 1, N-terminal domain | 0.59 | 41.0 | 4.16e-01 | 87.7% | 72.4% |
| 2p4vA01 | 1.10.287.180 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Transcription elongation factor, GreA/GreB, N-terminal domain | 0.58 | 43.0 | 3.87e-01 | 93.0% | 57.9% |
| 4ofzA02 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.57 | 45.0 | 3.13e-01 | 91.2% | 50.9% |
| 1cf7B00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 40.0 | 3.61e-01 | 94.7% | 52.4% |
| 1gkuB03 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.55 | 37.0 | 2.69e-01 | 70.2% | 83.3% |
| 4m70B00 | 1.10.246.200 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › WPP domain | 0.55 | 42.0 | 3.71e-01 | 94.7% | 53.8% |
| 3rrkA02 | 1.20.1460.20 | Mainly Alpha › Up-down Bundle › subunit c (vma5p) of the yeast v-atpase, domain 2 › | 0.55 | 46.0 | 3.33e-01 | 91.2% | 96.1% |
| 1cqxA01 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.54 | 47.0 | 3.51e-01 | 98.2% | 38.7% |
| 1te2A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.54 | 45.0 | 4.16e-01 | 91.2% | 97.2% |
| 2lfhA00 | 4.10.280.10 | Few Secondary Structures › Irregular › MYOD Basic-Helix-Loop-Helix Domain, subunit B › Helix-loop-helix DNA-binding domain | 0.54 | 43.0 | 4.11e-01 | 91.2% | 82.4% |
| 3t0yA01 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.54 | 38.0 | 3.70e-01 | 91.2% | 68.2% |
| 3ermB00 | 1.10.10.710 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › PSPTO_1197 like | 0.54 | 42.0 | 4.05e-01 | 98.2% | 73.4% |
| 3lyeA00 | 3.20.20.60 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphoenolpyruvate-binding domains | 0.53 | 42.0 | 2.68e-01 | 86.0% | 49.8% |
| 7qaqA01 | 3.40.50.11710 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Cyclodipeptide synthase | 0.53 | 46.0 | 3.12e-01 | 100.0% | 26.3% |
| 2wzfA03 | 1.20.120.990 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Glycosyltransferase family 88, C-terminal domain | 0.53 | 42.0 | 3.44e-01 | 96.5% | 78.2% |
| 2bskB00 | 1.10.287.810 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Mitochondrial import inner membrane translocase subunit tim13 like domains | 0.53 | 42.0 | 4.08e-01 | 100.0% | 78.5% |
| 1k68A00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.52 | 44.0 | 3.36e-01 | 96.5% | 80.7% |
| 4o92A02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.52 | 36.0 | 2.94e-01 | 87.7% | 40.0% |
| 3kbbA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.52 | 42.0 | 3.97e-01 | 91.2% | 97.1% |
| 2v4jA01 | 6.10.140.1420 | Special › Helix non-globular › Helix Hairpins › | 0.52 | 44.0 | 4.26e-01 | 100.0% | 87.3% |
| 3spcA02 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.51 | 44.0 | 3.47e-01 | 100.0% | 62.2% |
| 1e6cA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.51 | 40.0 | 2.87e-01 | 86.0% | 100.0% |
| 1b3qA01 | 1.10.287.560 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Histidine kinase CheA-like, homodimeric domain | 0.51 | 37.0 | 3.64e-01 | 87.7% | 71.0% |
| 2h8pC00 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.51 | 39.0 | 3.90e-01 | 91.2% | 84.2% |
| 2fbqA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.50 | 45.0 | 3.05e-01 | 100.0% | 26.8% |
ECOD (47)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3964225 | 130.1.1.0 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif | 0.89 | 77.0 | 7.30e-01 | 93.0% | 80.0% |
| 3392993 | 130.1.1.0 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif | 0.81 | 60.0 | 6.36e-01 | 78.9% | 92.0% |
| 3269634 | 192.17.1.0 ↗ | alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like | 0.81 | 60.0 | 5.94e-01 | 78.9% | 78.3% |
| 3943133 | 130.1.1.0 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif | 0.81 | 59.0 | 6.50e-01 | 82.5% | 100.0% |
| 3271283 | 130.1.1.20 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › HeH | 0.78 | 62.0 | 6.11e-01 | 86.0% | 81.7% |
| 3212604 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.77 | 65.0 | 4.66e-01 | 93.0% | 33.1% |
| 3173158 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.76 | 60.0 | 6.27e-01 | 96.5% | 100.0% |
| 3881355 | 130.1.1.0 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif | 0.75 | 56.0 | 5.93e-01 | 80.7% | 96.0% |
| 3268404 | 130.1.1.0 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif | 0.74 | 60.0 | 6.00e-01 | 94.7% | 86.7% |
| 3191284 | 130.1.1.16 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Ish1 | 0.74 | 59.0 | 6.25e-01 | 87.7% | 100.0% |
| 3169158 | 130.1.1.0 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif | 0.74 | 60.0 | 5.11e-01 | 94.7% | 55.6% |
| 3797432 | 130.1.1.0 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif | 0.73 | 56.0 | 5.74e-01 | 82.5% | 88.7% |
| 3511721 | 130.1.1.0 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif | 0.73 | 52.0 | 5.72e-01 | 77.2% | 100.0% |
| 3198528 | 130.1.1.16 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Ish1 | 0.72 | 59.0 | 6.01e-01 | 94.7% | 94.5% |
| 3724166 | 130.1.1.0 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif | 0.72 | 56.0 | 5.37e-01 | 98.2% | 75.4% |
| 5073927 | 2004.1.1.196 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_22 | 0.71 | 63.0 | 4.27e-01 | 96.5% | 47.4% |
| 3393615 | 103.4.1.0 ↗ | alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein | 0.70 | 49.0 | 3.94e-01 | 73.7% | 70.9% |
| 3368018 | 130.1.1.0 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif | 0.68 | 54.0 | 5.14e-01 | 93.0% | 72.9% |
| 2906440 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.68 | 46.0 | 4.29e-01 | 71.9% | 86.3% |
| 3801261 | 109.4.1.256 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Insc_C | 0.67 | 54.0 | 3.19e-01 | 93.0% | 31.3% |
| 3328642 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.65 | 44.0 | 3.86e-01 | 84.2% | 47.1% |
| 1877523 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.64 | 43.0 | 3.50e-01 | 71.9% | 92.0% |
| 3925064 | 148.1.1.7 ↗ | alpha arrays › Histone-like › Histone-related › Histone › TAF | 0.63 | 45.0 | 4.11e-01 | 93.0% | 57.3% |
| 5053895 | 181.1.1.1 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N | 0.63 | 51.0 | 4.54e-01 | 93.0% | 100.0% |
| 5060163 | 4009.1.1.0 ↗ | alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins | 0.62 | 43.0 | 4.13e-01 | 71.9% | 92.3% |
| 4120640 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.61 | 53.0 | 3.69e-01 | 100.0% | 34.9% |
| 5083788 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.61 | 39.0 | 2.98e-01 | 91.2% | 27.8% |
| 3865590 | 103.1.1.24 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › BIRC2-3-like_UBA | 0.61 | 44.0 | 4.25e-01 | 94.7% | 67.7% |
| 3469087 | 101.1.2.386 ↗ | alpha arrays › HTH › HTH › winged helix domain › WH_DRP | 0.59 | 42.0 | 3.90e-01 | 91.2% | 60.0% |
| 5078277 | 810.1.1.0 ↗ | a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) | 0.59 | 45.0 | 2.99e-01 | 87.7% | 19.2% |
| 4990741 | 102.1.2.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase | 0.58 | 44.0 | 2.78e-01 | 82.5% | 44.4% |
| 3811948 | 616.1.1.0 ↗ | alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain | 0.57 | 45.0 | 4.24e-01 | 98.2% | 70.0% |
| 3315324 | 148.1.1.0 ↗ | alpha arrays › Histone-like › Histone-related › Histone | 0.57 | 49.0 | 3.87e-01 | 96.5% | 82.5% |
| 3807996 | 616.1.1.0 ↗ | alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain | 0.57 | 42.0 | 4.09e-01 | 89.5% | 70.8% |
| 4061598 | 3498.1.1.2 ↗ | alpha arrays › RNA polymerase sigma factor rpoD N-terminal domain › RNA polymerase sigma factor rpoD N-terminal domain › RNA polymerase sigma factor rpoD N-terminal domain › Sigma70_r1_1 | 0.56 | 47.0 | 4.01e-01 | 98.2% | 100.0% |
| 3692508 | 4120.1.1.0 ↗ | few secondary structure elements › Tim10/DDP › Tim10/DDP › Tim10/DDP | 0.55 | 49.0 | 4.09e-01 | 100.0% | 79.0% |
| 5055352 | 2007.1.11.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › L-fucose isomerase, N-terminal and second domains | 0.55 | 48.0 | 3.68e-01 | 100.0% | 54.8% |
| 5039067 | 2007.1.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg | 0.55 | 44.0 | 3.38e-01 | 89.5% | 95.6% |
| 4236132 | 3254.1.1.1 ↗ | alpha arrays › helical domain in flagellar biosynthesis protein flhA › helical domain in flagellar biosynthesis protein flhA › helical domain in flagellar biosynthesis protein flhA › FHIPEP | 0.54 | 36.0 | 3.24e-01 | 71.9% | 64.4% |
| 3967708 | 179.1.1.1 ↗ | alpha bundles › CO dehydrogenase ISP C-domain like › CO dehydrogenase ISP C-domain like › CO dehydrogenase ISP C-domain like › Fer2_2 | 0.53 | 40.0 | 3.49e-01 | 87.7% | 52.2% |
| 3239066 | 2484.1.1.1 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 | 0.53 | 46.0 | 2.80e-01 | 100.0% | 57.6% |
| 3398176 | 5051.1.1.3 ↗ | alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › SSF | 0.52 | 45.0 | 2.62e-01 | 98.2% | 60.0% |
| 3505773 | 3265.1.1.1 ↗ | alpha arrays › C-terminal helical domain in tRNA modifying enzyme GidA › C-terminal helical domain in tRNA modifying enzyme GidA › C-terminal helical domain in tRNA modifying enzyme GidA › GIDA_C_1st | 0.52 | 43.0 | 3.90e-01 | 100.0% | 78.8% |
| 4369324 | 101.1.1.142 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › clamp_Gag1-like | 0.51 | 35.0 | 3.60e-01 | 71.9% | 90.9% |
| 3929245 | 101.1.1.103 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › DUF4817 | 0.51 | 40.0 | 4.08e-01 | 86.0% | 92.7% |
| 3929511 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.51 | 40.0 | 4.06e-01 | 84.2% | 87.3% |
| 5008337 | 7584.1.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › AMP-binding | 0.51 | 40.0 | 2.57e-01 | 89.5% | 18.5% |