←Back to structures

IMGVR_UViG_3300010332_000012-3300010332-Ga0116200_1000012411

Arc-Vir

IMGVR_UViG_3300010332_000012-3300010332-Ga0116200_1000012411

Identity

Kingdom:
archaea

Quality

90.2 mean pLDDT

Cluster

View cluster (60 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-48_147-218
PDB
Domain cluster: rep: NC_048125.1__YP_009817714.1__HOU80_gp73__00029__D3-58_177-254
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF24175.3 best SU10_adaptor 31.1 4.70e-07 71.3% 29.2%
D2 high residues 50-145
PDB
Domain cluster: rep: NC_023863.2__YP_009021671.1__CHOED_05__00005__D58-166
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5i0dA05 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.64 50.0 4.41e-01 99.0% 57.6%
4amwA04 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.58 50.0 4.34e-01 96.9% 61.5%
2zuvA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 46.0 4.46e-01 100.0% 78.3%
3wy2A03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.57 33.0 3.68e-01 95.8% 74.0%
3h7hB00 3.30.70.940 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › NusG, N-terminal domain 0.57 38.0 3.86e-01 87.5% 69.5%
2exuA02 3.30.70.940 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › NusG, N-terminal domain 0.54 38.0 3.92e-01 89.6% 76.3%
1nnhA00 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.54 44.0 3.17e-01 90.6% 83.6%
4ba0A04 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.53 43.0 3.75e-01 96.9% 57.7%
4y4qA00 2.40.260.10 Mainly Beta › Beta Barrel › Sortase; Chain: A; › Sortase 0.53 41.0 3.45e-01 85.4% 85.1%
4ei0A01 2.60.40.3550 Mainly Beta › Sandwich › Immunoglobulin-like › Domain of unknown function DUF4466 0.53 44.0 3.95e-01 100.0% 64.5%
4kbxA01 2.40.37.30 Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › 0.52 45.0 3.46e-01 100.0% 40.6%
6zlvA01 2.40.10.350 Mainly Beta › Beta Barrel › Thrombin, subunit H › Rod shape-determining protein MreC, domain 2 0.52 36.0 3.94e-01 84.4% 89.6%
2ww8A02 2.60.40.2110 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 44.0 3.55e-01 100.0% 57.1%
1sq4A02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.50 38.0 3.50e-01 100.0% 61.1%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3604177 3386.2.1.0 ↗ beta sandwiches › gp9 C-terminal domain-like › gp10 domain 2 and domain 3 › gp10 domain 2 and domain 3 0.69 48.0 5.45e-01 97.9% 100.0%
1031170 4178.1.1.0 ↗ beta sandwiches › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain 0.64 49.0 4.39e-01 99.0% 57.1%
4969769 12.1.1.34 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Glyco_hydro38C2 0.62 40.0 4.45e-01 95.8% 86.3%
2841577 10.2.1.0 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.58 45.0 4.85e-01 100.0% 100.0%
5083772 12.6.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycoside hydrolase family 127 middle domain-related › Glycoside hydrolase family 127 middle domain-related 0.57 50.0 4.44e-01 97.9% 67.9%
3962617 4081.1.1.2 ↗ beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT 0.56 49.0 3.92e-01 100.0% 54.6%
3786051 12.1.1.34 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Glyco_hydro38C2 0.56 43.0 4.07e-01 96.9% 66.7%
3486351 304.17.1.0 ↗ a+b two layers › Alpha-beta plaits › N-utilization substance G protein NusG, N-terminal domain › N-utilization substance G protein NusG, N-terminal domain 0.56 37.0 3.61e-01 87.5% 60.0%
4104254 304.17.1.2 ↗ a+b two layers › Alpha-beta plaits › N-utilization substance G protein NusG, N-terminal domain › N-utilization substance G protein NusG, N-terminal domain › Spt5-NGN 0.55 38.0 3.76e-01 89.6% 65.7%
5038375 4081.1.1.2 ↗ beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT 0.55 48.0 3.83e-01 100.0% 54.5%
4240507 314.1.1.1 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2 0.54 44.0 2.98e-01 88.5% 74.3%
4985742 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.54 35.0 3.52e-01 99.0% 65.3%
4295345 4178.1.1.0 ↗ beta sandwiches › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain 0.53 44.0 3.78e-01 100.0% 56.8%
4028554 10.30.1.0 ↗ beta sandwiches › jelly-roll › Latrophilin 1 gal_lectin domain › Latrophilin 1 gal_lectin domain 0.53 41.0 4.34e-01 97.9% 96.4%
1569000 290.1.1.1 ↗ beta barrels › Sortase › Sortase › Sortase › Sortase 0.53 41.0 3.45e-01 85.4% 85.1%
4270536 1.1.7.96 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FIST_C 0.52 45.0 4.47e-01 95.8% 94.0%
3186198 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.50 39.0 3.67e-01 100.0% 66.4%