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IMGVR_UViG_3300010332_000231-3300010332-Ga0116200_1000007421
Arc-VirIMGVR_UViG_3300010332_000231-3300010332-Ga0116200_1000007421
Identity
- Kingdom:
- archaea
Quality
84.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-75
Domain cluster:
representative
CATH (32)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5eoxB03 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.65 | 47.0 | 3.86e-01 | 75.7% | 82.8% |
| 2nrhB02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.64 | 47.0 | 3.73e-01 | 77.0% | 61.8% |
| 3agkA02 | 3.30.420.60 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › eRF1 domain 2 | 0.62 | 48.0 | 4.04e-01 | 83.8% | 83.1% |
| 1t6cA02 | 3.30.420.150 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Exopolyphosphatase. Domain 2 | 0.61 | 45.0 | 3.34e-01 | 77.0% | 76.2% |
| 7x3hA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.61 | 44.0 | 3.82e-01 | 77.0% | 87.1% |
| 3bexA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.60 | 45.0 | 3.96e-01 | 81.1% | 89.3% |
| 8gtyA02 | 3.30.420.150 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Exopolyphosphatase. Domain 2 | 0.60 | 43.0 | 3.29e-01 | 77.0% | 74.6% |
| 3hi0A02 | 3.30.420.150 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Exopolyphosphatase. Domain 2 | 0.59 | 42.0 | 3.21e-01 | 77.0% | 71.6% |
| 3hjhA02 | 3.30.2060.10 | Alpha Beta › 2-Layer Sandwich › Penicillin-binding protein 1b fold › Penicillin-binding protein 1b domain | 0.58 | 36.0 | 3.48e-01 | 82.4% | 54.7% |
| 2yx6D01 | 3.30.420.130 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Dinitrogenase iron-molybdenum cofactor biosynthesis domain | 0.58 | 45.0 | 4.06e-01 | 83.8% | 88.2% |
| 4m7xA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.57 | 43.0 | 4.05e-01 | 81.1% | 74.7% |
| 4fzxC00 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.57 | 44.0 | 3.42e-01 | 83.8% | 80.6% |
| 3df7A02 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.57 | 44.0 | 3.60e-01 | 93.2% | 45.3% |
| 2cx7A00 | 3.30.1050.10 | Alpha Beta › 2-Layer Sandwich › Nonspecific Lipid-transfer Protein; Chain A › SCP2 sterol-binding domain | 0.56 | 41.0 | 3.46e-01 | 87.8% | 45.0% |
| 1jcfA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.56 | 42.0 | 4.00e-01 | 81.1% | 73.0% |
| 2p1jA01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.56 | 43.0 | 3.55e-01 | 83.8% | 93.5% |
| 1u6zA02 | 3.30.420.150 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Exopolyphosphatase. Domain 2 | 0.56 | 40.0 | 3.11e-01 | 78.4% | 76.5% |
| 1pzxA03 | 3.30.1180.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › | 0.55 | 41.0 | 3.57e-01 | 81.1% | 86.9% |
| 4ktwA00 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.55 | 44.0 | 3.56e-01 | 93.2% | 75.0% |
| 1l0qA01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.54 | 36.0 | 2.39e-01 | 77.0% | 16.9% |
| 3mdqA02 | 3.30.420.150 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Exopolyphosphatase. Domain 2 | 0.54 | 43.0 | 3.27e-01 | 90.5% | 72.0% |
| 4hnvB01 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.52 | 45.0 | 2.95e-01 | 100.0% | 34.1% |
| 3cm1A00 | 2.30.31.20 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Sporulation-specific cell division protein SsgB | 0.51 | 44.0 | 3.67e-01 | 98.6% | 81.6% |
| 1mgpA02 | 3.30.1180.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › | 0.51 | 38.0 | 3.30e-01 | 81.1% | 87.6% |
| 1a9xA06 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.51 | 43.0 | 3.28e-01 | 100.0% | 56.2% |
| 4gj1A00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.51 | 36.0 | 2.58e-01 | 86.5% | 24.0% |
| 3t69A02 | 3.30.420.310 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 2-keto-3-deoxy-galactonokinase, C-terminal domain | 0.51 | 38.0 | 2.79e-01 | 82.4% | 77.9% |
| 1shyB01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.51 | 36.0 | 2.25e-01 | 74.3% | 34.7% |
| 2v6fA00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.51 | 40.0 | 2.67e-01 | 90.5% | 92.7% |
| 1e2tA02 | 3.30.1120.150 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.51 | 38.0 | 3.59e-01 | 78.4% | 69.8% |
| 4j0wA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.51 | 39.0 | 2.58e-01 | 93.2% | 19.3% |
| 2kr0A01 | 2.30.29.70 | Mainly Beta › Roll › PH-domain like › Proteasomal ubiquitin receptor Rpn13/ADRM1 | 0.50 | 38.0 | 3.39e-01 | 85.1% | 78.8% |
ECOD (31)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3954618 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.69 | 53.0 | 4.67e-01 | 82.4% | 85.5% |
| 3671443 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.68 | 48.0 | 5.10e-01 | 75.7% | 84.6% |
| 4663370 | 2484.1.1.37 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Pan_kinase | 0.68 | 50.0 | 4.09e-01 | 77.0% | 73.4% |
| 4931303 | 802.1.1.1 ↗ | a+b two layers › Hypothetical protein TM0160 › Hypothetical protein TM0160 › Hypothetical protein TM0160 › BFN_dom | 0.66 | 46.0 | 4.46e-01 | 77.0% | 64.7% |
| 5011985 | 2484.2.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Methylated DNA-protein cysteine methyltransferase domain › Methylated DNA-protein cysteine methyltransferase domain | 0.65 | 44.0 | 4.53e-01 | 70.3% | 74.3% |
| 4973193 | 802.1.1.1 ↗ | a+b two layers › Hypothetical protein TM0160 › Hypothetical protein TM0160 › Hypothetical protein TM0160 › BFN_dom | 0.64 | 46.0 | 4.43e-01 | 78.4% | 65.9% |
| 4043193 | 2484.1.1.37 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Pan_kinase | 0.64 | 50.0 | 4.35e-01 | 83.8% | 87.3% |
| 4136687 | 2484.1.1.37 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Pan_kinase | 0.64 | 49.0 | 4.11e-01 | 82.4% | 88.0% |
| 4674401 | 2484.1.1.37 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Pan_kinase | 0.63 | 49.0 | 4.42e-01 | 85.1% | 85.7% |
| 4976249 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.62 | 47.0 | 4.12e-01 | 82.4% | 74.8% |
| 4623449 | 2484.1.1.37 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Pan_kinase | 0.62 | 48.0 | 4.22e-01 | 83.8% | 89.1% |
| 3732098 | 65.1.1.0 ↗ | beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases | 0.62 | 47.0 | 4.94e-01 | 82.4% | 92.3% |
| 4229347 | 2484.1.1.37 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Pan_kinase | 0.62 | 49.0 | 4.32e-01 | 86.5% | 86.4% |
| 4049940 | 2484.1.1.37 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Pan_kinase | 0.61 | 47.0 | 3.91e-01 | 82.4% | 90.0% |
| 3591979 | 77.2.1.1 ↗ | beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN | 0.61 | 35.0 | 2.75e-01 | 74.3% | 27.1% |
| 4046244 | 2484.1.1.37 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Pan_kinase | 0.60 | 46.0 | 4.10e-01 | 85.1% | 90.0% |
| 5040710 | 2484.1.1.139 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF429 | 0.59 | 49.0 | 3.46e-01 | 89.2% | 74.3% |
| 4150972 | 2484.1.1.11 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Ribosomal_L18p | 0.58 | 42.0 | 3.96e-01 | 77.0% | 83.3% |
| 4096721 | 2484.1.1.37 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Pan_kinase | 0.58 | 45.0 | 3.82e-01 | 85.1% | 87.2% |
| 4988335 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.58 | 44.0 | 3.76e-01 | 83.8% | 65.6% |
| 3985394 | 304.107.1.0 ↗ | a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain | 0.57 | 43.0 | 3.12e-01 | 85.1% | 66.1% |
| 4206603 | 2484.1.1.37 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Pan_kinase | 0.56 | 43.0 | 3.93e-01 | 85.1% | 91.4% |
| 5066484 | 2484.1.1.333 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF1464 | 0.54 | 42.0 | 3.18e-01 | 87.8% | 72.5% |
| 4986005 | 2484.1.1.333 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF1464 | 0.54 | 43.0 | 3.40e-01 | 89.2% | 90.6% |
| 4971866 | 268.1.1.1 ↗ | a+b two layers › Sterol carrier protein-like › Sterol carrier protein, SCP-related › Sterol carrier protein, SCP-related › SCP2 | 0.54 | 46.0 | 3.74e-01 | 94.6% | 75.7% |
| 3480647 | 245.1.1.0 ↗ | a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 | 0.53 | 40.0 | 3.63e-01 | 83.8% | 98.1% |
| 5021465 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.51 | 42.0 | 2.96e-01 | 95.9% | 58.9% |
| 3171382 | 220.1.1.86 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › ZGRF1-like_N | 0.51 | 35.0 | 3.30e-01 | 71.6% | 88.9% |
| 5021368 | 2005.1.1.18 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase | 0.51 | 43.0 | 2.88e-01 | 95.9% | 54.1% |
| 3255777 | 4075.1.1.2 ↗ | a+b complex topology › RGC domain › RGC domain › RGC domain › PF29130 | 0.50 | 37.0 | 3.46e-01 | 79.7% | 68.4% |
| None | — | 0.50 | 36.0 | 2.26e-01 | 78.4% | 46.3% |