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IMGVR_UViG_3300010332_000247-3300010332-Ga0116200_100031821

Arc-Vir

IMGVR_UViG_3300010332_000247-3300010332-Ga0116200_100031821

Identity

Kingdom:
archaea

Quality

92.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-68
PDB
Domain cluster: representative
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF00133.29 best tRNA-synt_1 79.8 2.50e-22 96.9% 15.2%
PF09334.18 tRNA-synt_1g 26.1 5.20e-06 53.8% 8.2%
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ileA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.82 75.0 4.45e-01 100.0% 14.9%
1ffyA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.81 73.0 4.39e-01 100.0% 15.7%
3au5A03 1.20.80.10 Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › 0.51 36.0 3.04e-01 75.4% 46.4%
ECOD (28)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4609529 2005.1.1.40 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1+tRNA-synt_1g 0.88 82.0 5.05e-01 100.0% 20.0%
5014982 2005.1.1.1 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1 0.88 82.0 4.89e-01 100.0% 16.5%
4422873 2005.1.1.1 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1 0.85 78.0 4.81e-01 100.0% 18.6%
5055078 2005.1.1.1 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1 0.85 78.0 4.60e-01 100.0% 14.1%
4570776 2005.1.1.1 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1 0.85 78.0 4.77e-01 100.0% 18.1%
4369642 2005.1.1.40 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1+tRNA-synt_1g 0.85 78.0 4.68e-01 100.0% 16.2%
4949206 140.1.1.5 ↗ alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon_1 0.85 78.0 4.88e-01 100.0% 20.9%
4994381 2005.1.1.0 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.85 78.0 4.78e-01 100.0% 18.6%
4943328 2005.1.1.1 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1 0.84 77.0 4.68e-01 100.0% 17.6%
3497002 2005.1.1.1 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1 0.84 77.0 4.68e-01 100.0% 17.6%
3752156 2005.1.1.1 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1 0.84 77.0 5.30e-01 100.0% 32.5%
3683117 2005.1.1.40 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1+tRNA-synt_1g 0.84 77.0 4.71e-01 100.0% 18.6%
4982530 2005.1.1.1 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1 0.83 77.0 4.73e-01 100.0% 19.4%
4811465 2005.1.1.1 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1 0.83 76.0 6.75e-01 100.0% 71.4%
4215084 2005.1.1.40 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1+tRNA-synt_1g 0.83 76.0 4.80e-01 100.0% 21.3%
4235284 375.1.1.203 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › tRNA-synt_1, tRNA-synt_1g 0.83 75.0 4.60e-01 100.0% 17.6%
4441740 2005.1.1.1 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1 0.82 75.0 4.65e-01 100.0% 19.4%
4072306 2005.1.1.40 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1+tRNA-synt_1g 0.82 75.0 4.47e-01 100.0% 15.1%
4351010 2005.1.1.1 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1 0.82 75.0 4.51e-01 100.0% 16.2%
4073310 2005.1.1.1 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1 0.82 75.0 4.43e-01 100.0% 14.6%
3598046 2005.1.1.0 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.82 74.0 4.58e-01 100.0% 18.8%
4647979 375.1.1.1 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › tRNA-synt_1 0.82 74.0 4.51e-01 100.0% 17.1%
4097142 2005.1.1.40 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1+tRNA-synt_1g 0.80 72.0 4.37e-01 100.0% 17.1%
4974610 2005.1.1.0 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.79 71.0 4.33e-01 100.0% 16.5%
4077229 2005.1.1.1 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1 0.79 70.0 4.35e-01 100.0% 18.1%
4506409 2005.1.1.1 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1 0.78 71.0 4.61e-01 100.0% 24.1%
3629005 3722.1.1.1 ↗ alpha bundles › Protein regulator of cytokinesis 1 (PRC1) rod domain › Protein regulator of cytokinesis 1 (PRC1) rod domain › Protein regulator of cytokinesis 1 (PRC1) rod domain › MAP65_ASE1 0.62 43.0 2.93e-01 72.3% 39.1%
3882598 2004.1.1.635 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › KTI12, AAA_33 0.52 44.0 3.12e-01 96.9% 87.3%