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IMGVR_UViG_3300010338_002029-3300010338-Ga0116245_100174877

Arc-Vir

IMGVR_UViG_3300010338_002029-3300010338-Ga0116245_100174877

Quality

91.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-81
PDB
Domain cluster: representative
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1x8zB00 1.20.140.40 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Invertase/pectin methylesterase inhibitor family protein 0.78 72.0 5.82e-01 100.0% 76.9%
3fseB02 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.74 56.0 4.58e-01 80.2% 93.8%
2rbdA01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.73 55.0 4.46e-01 80.2% 90.7%
2v0oB00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.73 44.0 2.99e-01 100.0% 18.1%
1st6A03 1.20.120.810 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Vinculin, Vh2 four-helix bundle 0.72 44.0 3.11e-01 100.0% 21.8%
2yfaB01 1.20.1440.210 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.72 54.0 4.75e-01 80.2% 68.9%
5cy5B00 1.20.1200.10 Mainly Alpha › Up-down Bundle › Hypothetical Protein Ta1238; Chain: A; › Cobalamin adenosyltransferase-like 0.70 63.0 5.18e-01 100.0% 70.5%
1f1mA00 1.20.120.240 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Lipoprotein, type 6 0.68 51.0 4.11e-01 80.2% 56.8%
2hz8A00 1.20.120.660 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › IL-4 antagonist (De novo design) like domain 0.68 51.0 4.55e-01 80.2% 75.7%
5ffdA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.68 63.0 5.17e-01 100.0% 66.4%
1vsgA02 1.10.470.10 Mainly Alpha › Orthogonal Bundle › Variant Surface Glycoprotein, subunit A; domain 2 › Variant Surface Glycoprotein, subunit A, domain 2 0.68 51.0 4.08e-01 80.2% 80.5%
4w8pA02 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.67 50.0 4.31e-01 79.0% 66.9%
4etrB00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.67 60.0 5.21e-01 100.0% 64.8%
1xg2B00 1.20.140.40 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Invertase/pectin methylesterase inhibitor family protein 0.67 56.0 4.66e-01 95.1% 79.5%
1fioA00 1.20.58.70 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.67 51.0 3.88e-01 81.5% 54.2%
3hmfA00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.64 57.0 5.07e-01 98.8% 89.7%
6k6iA00 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.64 55.0 4.11e-01 98.8% 62.6%
1i6zA00 1.20.58.120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain 0.63 48.0 4.07e-01 82.7% 75.6%
5pg1A00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.63 54.0 4.83e-01 96.3% 83.5%
3m7gA02 1.10.8.1010 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.62 44.0 4.16e-01 72.8% 83.2%
4dylA01 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.62 40.0 2.84e-01 100.0% 21.2%
2kz5A00 1.10.880.10 Mainly Alpha › Orthogonal Bundle › Transcription Factor Skn-1; Chain P › Transcription factor, Skn-1-like, DNA-binding domain 0.62 44.0 4.29e-01 90.1% 67.0%
2w9yA00 1.20.120.1100 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.61 45.0 3.81e-01 98.8% 46.3%
3pe0A02 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.61 46.0 4.24e-01 81.5% 93.4%
2dnxA00 1.20.58.70 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.61 50.0 4.31e-01 91.4% 83.8%
4mo7A02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.61 47.0 3.89e-01 82.7% 62.0%
4l8iB00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.60 48.0 4.35e-01 86.4% 94.6%
2z16B01 1.20.91.10 Mainly Alpha › Up-down Bundle › Influenza Virus Matrix Protein; Chain A, domain 1 › Influenza matrix M1, N-terminal subdomain 1 0.60 47.0 4.82e-01 92.6% 93.6%
5d18A00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.59 47.0 3.56e-01 87.7% 65.3%
4me9B00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.59 44.0 3.44e-01 81.5% 46.8%
4ga4A01 1.20.970.10 Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 0.58 37.0 4.00e-01 75.3% 77.6%
3pjaJ01 1.20.58.190 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 1 0.58 43.0 3.71e-01 79.0% 64.1%
3h5qA01 1.20.970.10 Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 0.57 38.0 3.98e-01 72.8% 78.6%
6wfqC01 1.20.120.530 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › GntR ligand-binding domain-like 0.57 51.0 4.20e-01 98.8% 58.5%
2gmyD00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.57 51.0 4.22e-01 100.0% 85.5%
1w0bA01 1.20.58.420 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › AHSP 0.57 45.0 4.38e-01 86.4% 95.7%
2wzkA01 1.20.1310.10 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats 0.56 44.0 3.77e-01 86.4% 52.8%
3c7jA02 1.20.120.530 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › GntR ligand-binding domain-like 0.56 49.0 4.06e-01 98.8% 63.7%
2kvsA00 1.10.150.260 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › YozE SAM-like 0.55 45.0 4.57e-01 93.8% 91.3%
7ed6A01 1.25.40.340 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › DhaL domain 0.53 46.0 3.50e-01 97.5% 46.9%
2di3B02 1.20.120.530 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › GntR ligand-binding domain-like 0.52 46.0 3.75e-01 98.8% 54.2%
5c8aA01 1.10.1240.10 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain 0.52 42.0 4.26e-01 92.6% 92.3%
1e6dM01 1.20.85.10 Mainly Alpha › Up-down Bundle › Photosynthetic Reaction Center, subunit M; domain 1 › Photosystem II protein D1-like 0.51 47.0 3.86e-01 100.0% 62.9%
3hn2A02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.51 42.0 3.67e-01 92.6% 85.2%
2fj6A01 1.10.150.260 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › YozE SAM-like 0.51 39.0 4.09e-01 82.7% 98.6%
4c5fA02 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.50 43.0 3.46e-01 97.5% 88.7%
7s3lA01 3.90.1200.10 Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe 0.50 44.0 3.49e-01 96.3% 77.0%
ECOD (59)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3312398 633.4.1.1 alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor › PMEI 0.82 75.0 5.89e-01 100.0% 78.8%
4525096 633.4.1.1 alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor › PMEI 0.79 72.0 5.64e-01 100.0% 80.6%
5069358 633.12.1.0 alpha bundles › Bromodomain-like › Ta0600-like › Ta0600-like 0.77 66.0 6.67e-01 92.6% 97.5%
1413973 150.1.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.75 57.0 4.67e-01 80.2% 85.1%
5082470 150.1.1.3 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › Rubrerythrin 0.75 56.0 4.45e-01 80.2% 91.4%
3802170 633.4.1.1 alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor › PMEI 0.73 67.0 5.39e-01 100.0% 66.7%
3925930 604.6.1.1 alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain › GAT 0.73 55.0 5.14e-01 80.2% 91.0%
3332512 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.72 63.0 4.87e-01 100.0% 64.7%
3794795 603.1.1.3 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › V-SNARE 0.72 54.0 5.06e-01 80.2% 94.0%
3740210 603.1.1.105 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › PF31021 0.72 56.0 4.51e-01 82.7% 68.7%
5046459 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.71 54.0 4.29e-01 80.2% 64.0%
3992612 604.6.1.1 alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain › GAT 0.71 53.0 5.18e-01 80.2% 100.0%
3807085 604.3.1.1 alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › BAG 0.70 51.0 5.11e-01 77.8% 92.9%
3573559 604.3.1.1 alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › BAG 0.70 54.0 4.69e-01 81.5% 86.7%
3430123 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.69 50.0 3.89e-01 76.5% 51.7%
4026671 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.69 52.0 4.62e-01 80.2% 81.7%
3834159 603.1.1.17 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › SNARE 0.69 49.0 3.84e-01 76.5% 52.2%
3461370 604.3.1.0 alpha bundles › Spectrin repeat-like › BAG domain › BAG domain 0.68 51.0 5.08e-01 80.2% 92.9%
3823040 633.4.1.1 alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor › PMEI 0.68 61.0 4.79e-01 100.0% 68.8%
3665138 604.3.1.0 alpha bundles › Spectrin repeat-like › BAG domain › BAG domain 0.68 52.0 4.77e-01 81.5% 81.0%
3471396 604.6.1.0 alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain 0.68 50.0 4.78e-01 79.0% 93.7%
3272287 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.68 46.0 4.27e-01 100.0% 57.0%
4935725 3684.1.1.0 alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like 0.67 50.0 4.28e-01 80.2% 63.0%
3956181 3291.1.1.0 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.67 56.0 4.81e-01 95.1% 83.7%
3498448 604.3.1.0 alpha bundles › Spectrin repeat-like › BAG domain › BAG domain 0.67 51.0 5.15e-01 81.5% 98.8%
3285823 633.6.1.0 alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like 0.66 59.0 4.89e-01 100.0% 85.5%
4979260 150.1.1.3 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › Rubrerythrin 0.66 60.0 4.97e-01 100.0% 65.0%
5044422 150.1.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.66 52.0 4.30e-01 85.2% 97.9%
None 0.66 51.0 5.08e-01 84.0% 97.6%
3474227 601.1.1.1 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › Vinculin 0.66 48.0 4.13e-01 79.0% 68.1%
3391380 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.65 48.0 4.49e-01 80.2% 91.4%
3927597 604.3.1.0 alpha bundles › Spectrin repeat-like › BAG domain › BAG domain 0.65 51.0 4.46e-01 84.0% 88.3%
3467780 633.4.1.1 alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor › PMEI 0.65 51.0 4.14e-01 84.0% 65.3%
3499671 109.4.1.142 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CSN8_PSD8_EIF3K 0.64 54.0 4.61e-01 91.4% 63.2%
5028703 2004.1.1.76 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF87 0.63 46.0 3.07e-01 95.1% 19.1%
3191764 376.1.1.21 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.62 55.0 4.76e-01 95.1% 98.3%
5010237 150.1.1.3 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › Rubrerythrin 0.62 55.0 4.74e-01 100.0% 74.6%
3582803 601.1.2.1 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › Vinculin 0.62 43.0 3.86e-01 72.8% 72.2%
3932801 4085.1.1.0 alpha arrays › RbcX-like › RbcX-like › RbcX-like 0.61 46.0 4.27e-01 79.0% 71.0%
3608548 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.60 50.0 3.36e-01 92.6% 24.4%
4495368 3579.1.1.0 extended segments › NADH-quinone oxidoreductase subunit J › NADH-quinone oxidoreductase subunit J › NADH-quinone oxidoreductase subunit J 0.59 47.0 3.82e-01 84.0% 58.7%
4846601 603.5.1.1 alpha bundles › STAT-like › FlgN-like › FlgN-like › FlgN 0.59 43.0 3.84e-01 80.2% 79.5%
3436979 109.4.1.1401 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_RPAP1 0.58 40.0 2.95e-01 74.1% 43.3%
3697545 101.1.17.21 alpha arrays › HTH › HTH › FF domain › Tri-helical 0.58 52.0 4.96e-01 100.0% 98.9%
3763454 5086.1.1.87 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › ING 0.57 44.0 3.83e-01 100.0% 55.0%
3968410 3843.1.1.4 alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › PhaG_MnhG_YufB 0.57 42.0 3.95e-01 79.0% 86.0%
5055035 5050.1.1.9 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.57 50.0 3.78e-01 100.0% 86.0%
4946230 5001.1.1.0 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.56 43.0 3.19e-01 85.2% 90.4%
3963373 5059.1.1.0 alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter 0.55 48.0 3.34e-01 100.0% 56.9%
3947741 5086.1.1.84 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HH_MFP_RND 0.55 47.0 4.09e-01 100.0% 61.7%
4991684 2004.1.1.76 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF87 0.55 49.0 3.35e-01 97.5% 28.7%
5011452 2004.1.1.76 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF87 0.55 49.0 3.24e-01 100.0% 39.1%
5042552 2004.1.1.76 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF87 0.54 48.0 3.12e-01 98.8% 26.0%
5022179 632.3.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Phosphoprotein XD domain › Phosphoprotein XD domain 0.54 45.0 4.20e-01 93.8% 77.1%
3627942 3755.4.1.1 alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › PI3K_P85_iSH2 0.54 41.0 3.22e-01 100.0% 38.3%
5026703 2004.1.1.76 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF87 0.54 45.0 2.97e-01 93.8% 34.0%
3501567 7004.1.1.0 0.52 35.0 3.45e-01 100.0% 63.5%
3971367 179.1.1.1 alpha bundles › CO dehydrogenase ISP C-domain like › CO dehydrogenase ISP C-domain like › CO dehydrogenase ISP C-domain like › Fer2_2 0.52 44.0 4.42e-01 97.5% 91.6%
3592461 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.51 38.0 3.23e-01 81.5% 82.1%