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IMGVR_UViG_3300010346_001987-3300010346-Ga0116239_100190211

Arc-Vir

IMGVR_UViG_3300010346_001987-3300010346-Ga0116239_100190211

Quality

71.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 18-78
PDB
Domain cluster: representative
CATH (51)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3j7aF03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.80 58.0 5.44e-01 83.6% 64.8%
6az1E03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.79 57.0 5.39e-01 83.6% 63.9%
6cnhA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.76 52.0 4.76e-01 90.2% 55.0%
1w4sA00 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.75 60.0 4.45e-01 85.2% 47.9%
6s8zA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.75 58.0 5.86e-01 96.7% 82.3%
3a5zB01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.74 59.0 5.85e-01 98.4% 82.5%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.73 55.0 5.53e-01 90.2% 79.0%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.72 57.0 5.69e-01 98.4% 82.5%
4iupA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.71 61.0 5.70e-01 90.2% 86.1%
3oyyA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.70 57.0 5.62e-01 98.4% 81.8%
5ygbA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.70 58.0 5.31e-01 96.7% 68.8%
3iuwA00 2.30.130.30 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › Hypothetical protein. 0.69 56.0 5.15e-01 88.5% 96.2%
1whlA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.69 55.0 4.74e-01 86.9% 78.9%
1rl2A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.68 43.0 4.49e-01 70.5% 69.6%
1b9mA03 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.68 47.0 4.47e-01 95.1% 62.0%
4b6mB00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.67 54.0 4.90e-01 85.2% 82.3%
3m9qA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 55.0 5.26e-01 90.2% 84.7%
7c9rH01 3.90.50.10 Alpha Beta › Alpha-Beta Complex › Photosynthetic Reaction Center; Chain H, domain 2 › Photosynthetic Reaction Center, subunit H, domain 2 0.66 48.0 3.61e-01 86.9% 31.8%
7oc3A01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 59.0 5.09e-01 98.4% 70.7%
2e5wA01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.64 44.0 4.56e-01 75.4% 78.6%
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 48.0 4.79e-01 80.3% 79.0%
2cmgA01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.63 43.0 4.64e-01 75.4% 86.3%
2jkgA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.61 49.0 3.65e-01 98.4% 33.3%
1inlC02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.61 43.0 4.28e-01 78.7% 71.9%
3u4vA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 47.0 3.89e-01 90.2% 85.3%
2xklA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.59 48.0 3.73e-01 93.4% 49.0%
3urgA02 2.30.30.530 Mainly Beta › Roll › SH3 type barrels. › Calcium binding protein CcbP, beta-barrel domain 0.58 43.0 4.30e-01 82.0% 81.0%
2il5A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.58 47.0 3.54e-01 93.4% 45.1%
3o4fC01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.57 40.0 4.27e-01 75.4% 88.2%
7tzoA01 1.10.1070.11 Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, Domain 5 › Phosphatidylinositol 3-/4-kinase, catalytic domain 0.57 46.0 3.49e-01 96.7% 98.3%
5cbeE00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.57 34.0 3.41e-01 70.5% 57.8%
2b2cA01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.57 45.0 4.45e-01 100.0% 82.8%
3ayjA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.56 48.0 2.93e-01 93.4% 45.6%
4c5wA01 3.30.2020.30 Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › 0.56 44.0 3.82e-01 86.9% 80.4%
4dsdA00 3.40.1420.30 Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › 0.56 42.0 3.41e-01 83.6% 42.9%
1xjvA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 45.0 3.52e-01 93.4% 77.5%
3c96A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 47.0 3.41e-01 93.4% 41.7%
5wb2B00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.55 33.0 3.15e-01 70.5% 49.3%
1icwB00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.55 35.0 3.41e-01 70.5% 59.1%
1iy9A02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.55 38.0 3.96e-01 78.7% 86.5%
1f9qD00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.53 33.0 3.29e-01 70.5% 57.6%
2mp1A00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.53 33.0 3.08e-01 70.5% 49.4%
2o07A01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.53 38.0 3.90e-01 100.0% 83.1%
6htnA01 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.52 46.0 3.57e-01 100.0% 60.6%
6xmtA02 3.40.1110.10 Alpha Beta › 3-Layer(aba) Sandwich › Calcium-transporting ATPase, cytoplasmic domain N › Calcium-transporting ATPase, cytoplasmic domain N 0.52 43.0 3.23e-01 95.1% 44.0%
5gvyA00 2.100.10.30 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Jacalin-like lectin domain 0.52 41.0 3.11e-01 100.0% 35.9%
1eqtA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.51 31.0 3.10e-01 70.5% 55.2%
5yjwA00 3.50.50.100 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › 0.51 42.0 2.53e-01 91.8% 21.8%
4xb1A02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.51 34.0 2.79e-01 70.5% 78.4%
2k0mA00 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 41.0 3.60e-01 100.0% 78.8%
2yrlA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 41.0 3.74e-01 91.8% 90.4%
ECOD (56)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4271974 4.1.1.3 beta barrels › SH3 › SH3 › SH3 › KOW 0.81 60.0 5.89e-01 85.2% 73.4%
3741680 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.79 57.0 5.99e-01 83.6% 83.6%
4605602 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.79 56.0 5.49e-01 82.0% 69.2%
3959531 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.77 63.0 6.06e-01 98.4% 77.1%
4012953 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.75 61.0 4.48e-01 86.9% 42.0%
4345080 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.75 60.0 5.86e-01 98.4% 80.0%
5073368 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.74 57.0 5.47e-01 100.0% 71.4%
3660358 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.74 55.0 5.60e-01 86.9% 80.0%
3725498 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.74 56.0 5.34e-01 90.2% 70.0%
3190995 4.8.1.22 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › DUF7025 0.73 60.0 4.24e-01 88.5% 36.6%
3933293 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.73 40.0 4.12e-01 70.5% 56.9%
1821014 4.1.1.70 beta barrels › SH3 › SH3 › SH3 › Tsr0524-like 0.72 57.0 5.62e-01 83.6% 85.9%
5034724 4.1.1.482 beta barrels › SH3 › SH3 › SH3 › DUF4314 0.70 54.0 5.68e-01 82.0% 90.9%
4990487 4.6.1.0 beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain 0.70 49.0 4.71e-01 83.6% 64.3%
3550699 4.8.1.10 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like 0.69 56.0 4.82e-01 88.5% 63.2%
3586469 4.1.1.287 beta barrels › SH3 › SH3 › SH3 › DUF5641 0.68 62.0 5.48e-01 98.4% 71.8%
4940710 3174.2.1.0 beta barrels › Ribosomal protein L14-like › Barrel domain in flagellar protein FlgA › Barrel domain in flagellar protein FlgA 0.68 54.0 5.36e-01 85.2% 80.0%
3828614 4.1.1.158 beta barrels › SH3 › SH3 › SH3 › DUF3444 0.68 57.0 4.70e-01 91.8% 75.5%
3451280 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 59.0 4.31e-01 95.1% 88.4%
3675120 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.67 54.0 4.82e-01 86.9% 75.3%
4190716 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.67 45.0 3.62e-01 72.1% 37.4%
3593976 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 56.0 4.32e-01 91.8% 54.6%
4982354 4.7.1.0 beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 0.65 50.0 4.97e-01 85.2% 78.5%
4027502 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 49.0 4.84e-01 88.5% 76.9%
3601811 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.64 57.0 4.04e-01 100.0% 35.4%
3907176 4.1.1.248 beta barrels › SH3 › SH3 › SH3 › CABIT 0.62 54.0 4.79e-01 100.0% 86.7%
3235931 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.62 53.0 2.81e-01 100.0% 4.5%
3933112 206.1.1.8 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PI3_PI4_kinase,FATC 0.61 47.0 2.86e-01 85.2% 13.7%
3600728 206.1.1.8 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PI3_PI4_kinase,FATC 0.61 52.0 3.20e-01 100.0% 18.7%
3801220 206.1.1.8 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PI3_PI4_kinase,FATC 0.61 47.0 2.89e-01 86.9% 13.6%
3660160 206.1.1.20 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.61 45.0 3.15e-01 80.3% 27.1%
3633543 206.1.1.78 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, Kinase-like 0.60 48.0 2.98e-01 91.8% 14.6%
4090143 298.1.1.38 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › OpcA_G6PD_C 0.60 47.0 3.36e-01 85.2% 56.7%
3767452 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 53.0 4.35e-01 100.0% 86.4%
3639167 206.1.1.8 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PI3_PI4_kinase,FATC 0.59 46.0 2.83e-01 86.9% 14.4%
3585074 206.1.1.8 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PI3_PI4_kinase,FATC 0.59 46.0 2.85e-01 86.9% 15.3%
3649822 206.1.1.7 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PI3_PI4_kinase 0.59 45.0 2.83e-01 86.9% 15.1%
3274695 206.1.1.8 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PI3_PI4_kinase,FATC 0.59 45.0 2.85e-01 86.9% 15.2%
3915693 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.58 36.0 3.52e-01 70.5% 56.9%
3940942 206.1.1.8 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PI3_PI4_kinase,FATC 0.58 46.0 2.78e-01 86.9% 26.1%
3610464 206.1.1.7 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PI3_PI4_kinase 0.58 48.0 2.99e-01 96.7% 26.6%
4546124 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.58 50.0 2.69e-01 100.0% 5.3%
3972842 2.6.1.1 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase 0.57 40.0 3.21e-01 75.4% 68.5%
1700100 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.57 34.0 3.48e-01 70.5% 60.7%
3377637 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 38.0 2.52e-01 100.0% 15.6%
4818765 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.56 43.0 4.41e-01 86.9% 98.3%
4877991 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.56 42.0 3.59e-01 82.0% 55.8%
3859059 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.56 33.0 2.95e-01 70.5% 41.1%
3589473 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.55 42.0 3.86e-01 98.4% 62.5%
4025752 2003.1.2.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.55 47.0 2.89e-01 93.4% 24.1%
3899072 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.55 33.0 3.22e-01 70.5% 52.9%
4407054 3699.1.1.1 beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N 0.55 39.0 3.97e-01 98.4% 80.0%
4030767 3504.1.1.1 beta barrels › MutM N-terminal domain-like › Hypothetical protein YojF › Hypothetical protein YojF › DUF1806 0.53 42.0 3.47e-01 91.8% 67.5%
3960441 2003.1.5.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.52 44.0 2.92e-01 95.1% 34.0%
3252578 5.1.4.34 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nup88 0.50 43.0 2.55e-01 100.0% 17.0%
3967584 9.11.1.0 beta barrels › Lipocalins/Streptavidin › YdhA-like › YdhA-like 0.50 40.0 3.73e-01 98.4% 70.0%