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IMGVR_UViG_3300010346_002216-3300010346-Ga0116239_100382469

Arc-Vir

IMGVR_UViG_3300010346_002216-3300010346-Ga0116239_100382469

Identity

Kingdom:
archaea

Quality

84.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 12-74
PDB
Domain cluster: rep: OP296522.1__UYD72080.1__VG_p32__00032__D12-60
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1y02A01 1.10.720.140 Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › 0.74 45.0 4.20e-01 74.6% 50.0%
1wimA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.72 55.0 4.81e-01 82.5% 89.4%
3goxA02 3.30.60.130 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.71 55.0 5.89e-01 84.1% 96.3%
1zbdB00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.70 52.0 4.09e-01 77.8% 41.5%
7yuiB01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.65 47.0 4.24e-01 77.8% 94.3%
2y43A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.62 40.0 3.61e-01 81.0% 46.6%
3t7lA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.58 47.0 4.51e-01 88.9% 93.2%
3fjuB00 3.30.40.170 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › 0.57 33.0 3.28e-01 76.2% 53.8%
2m85A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.56 41.0 4.08e-01 77.8% 75.4%
5fb0C01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.55 42.0 4.31e-01 84.1% 93.4%
3v43A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.52 39.0 3.32e-01 84.1% 59.8%
ECOD (39)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3561303 378.1.1.0 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.83 55.0 3.96e-01 71.4% 26.1%
3438467 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.74 56.0 4.88e-01 79.4% 96.7%
3910122 376.1.3.4 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE_2 0.73 51.0 4.93e-01 76.2% 65.7%
1002459 378.1.1.13 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › His_Me_b4a2 0.73 55.0 5.95e-01 79.4% 98.1%
3683169 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.72 55.0 4.65e-01 81.0% 83.0%
3343337 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.70 52.0 4.71e-01 79.4% 97.6%
3869401 376.1.3.4 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE_2 0.70 51.0 3.91e-01 79.4% 35.0%
3380766 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.68 56.0 4.71e-01 87.3% 84.0%
3912396 376.1.3.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD 0.67 45.0 4.76e-01 73.0% 80.0%
3611194 376.1.3.32 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › RH_dom 0.66 57.0 4.80e-01 95.2% 91.3%
3705738 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.65 50.0 5.12e-01 84.1% 86.7%
3211002 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.64 44.0 4.27e-01 71.4% 88.6%
3225705 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.63 42.0 4.72e-01 71.4% 95.6%
4056277 376.1.3.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD 0.63 40.0 4.02e-01 71.4% 63.1%
2428742 3961.1.1.0 ↗ 0.62 45.0 3.60e-01 77.8% 57.5%
3993221 376.1.3.32 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › RH_dom 0.62 52.0 4.64e-01 93.7% 93.3%
3797752 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.61 53.0 5.00e-01 95.2% 100.0%
3401103 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.61 55.0 4.66e-01 98.4% 97.0%
3333897 376.1.3.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD 0.61 41.0 3.81e-01 73.0% 55.0%
4488005 376.1.3.4 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE_2 0.60 54.0 4.70e-01 98.4% 100.0%
3817237 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.60 40.0 3.87e-01 77.8% 58.7%
3938379 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.60 45.0 4.49e-01 81.0% 78.5%
3322727 377.1.1.4 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › GATA 0.60 38.0 4.27e-01 77.8% 88.9%
3798139 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.60 48.0 4.21e-01 87.3% 81.1%
3846283 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.59 40.0 4.40e-01 85.7% 90.0%
3607925 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.59 51.0 4.90e-01 98.4% 97.3%
5061253 376.1.3.97 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › Prok-RING_2 0.59 54.0 4.95e-01 100.0% 98.8%
3753185 376.1.3.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD 0.59 39.0 3.84e-01 71.4% 62.9%
1088466 376.1.3.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD 0.56 41.0 4.08e-01 77.8% 75.4%
3700825 376.1.3.3 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE 0.56 43.0 3.78e-01 84.1% 69.5%
3216239 376.1.3.9 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD_2 0.55 38.0 3.67e-01 71.4% 67.1%
3300469 377.9.1.1 ↗ few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like › zf-MYND 0.54 35.0 3.77e-01 71.4% 84.0%
3484196 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.53 42.0 4.14e-01 87.3% 100.0%
3219652 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.52 41.0 3.01e-01 85.7% 97.6%
3815937 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.51 35.0 3.64e-01 74.6% 90.0%
3301385 376.1.3.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD 0.51 37.0 3.24e-01 79.4% 50.0%
3274457 376.1.3.3 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE 0.51 42.0 2.64e-01 88.9% 22.5%
3518155 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.51 42.0 2.74e-01 100.0% 71.9%
3390772 391.1.2.3 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › SVWC 0.50 38.0 3.57e-01 87.3% 92.9%