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IMGVR_UViG_3300010346_002506-3300010346-Ga0116239_1000370025
Arc-VirIMGVR_UViG_3300010346_002506-3300010346-Ga0116239_1000370025
Identity
- Kingdom:
- archaea
Quality
79.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 8-91
Domain cluster:
representative
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4x28A03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.67 | 48.0 | 3.83e-01 | 73.8% | 54.7% |
| 4fjvA02 | 1.20.1300.20 | Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Peptidase C65 Otubain, subdomain 2 | 0.61 | 44.0 | 3.77e-01 | 77.4% | 100.0% |
| 2ip6A00 | 1.20.1440.140 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.61 | 42.0 | 4.19e-01 | 72.6% | 70.1% |
| 6qumA04 | 1.10.1140.10 | Mainly Alpha › Orthogonal Bundle › Bovine Mitochondrial F1-ATPase, ATP Synthase Beta Chain; Chain D, domain3 › Bovine Mitochondrial F1-atpase; Atp Synthase Beta Chain; Chain D, domain 3 | 0.60 | 48.0 | 4.07e-01 | 90.5% | 81.2% |
| 2mqaA00 | 1.10.274.60 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, repetitive domain | 0.59 | 43.0 | 3.83e-01 | 78.6% | 52.8% |
| 6mh4A03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.57 | 46.0 | 4.79e-01 | 88.1% | 96.2% |
| 3gehA02 | 1.20.120.430 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › tRNA modification GTPase MnmE domain 2 | 0.56 | 46.0 | 3.69e-01 | 89.3% | 74.3% |
| 3a06B03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.56 | 46.0 | 4.55e-01 | 92.9% | 86.4% |
| 1el4A00 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.56 | 40.0 | 3.17e-01 | 77.4% | 52.1% |
| 3u9jA00 | 1.20.120.520 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › nmb1532 protein domain like | 0.52 | 39.0 | 3.27e-01 | 82.1% | 66.9% |
| 1ac5A00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.52 | 43.0 | 2.77e-01 | 96.4% | 64.6% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5027309 | 160.1.1.4 ↗ | alpha superhelices › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase › ATP-synt_VA_C | 0.61 | 54.0 | 4.43e-01 | 96.4% | 63.3% |
| 4977018 | 160.1.1.0 ↗ | alpha superhelices › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase | 0.61 | 50.0 | 4.32e-01 | 90.5% | 83.0% |
| 4938210 | 160.1.1.4 ↗ | alpha superhelices › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase › ATP-synt_VA_C | 0.61 | 54.0 | 4.59e-01 | 100.0% | 72.1% |
| 3989722 | 632.24.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › GBS CAMP factor C-terminal domain › GBS CAMP factor C-terminal domain | 0.61 | 42.0 | 4.58e-01 | 71.4% | 98.5% |
| 5080904 | 160.1.1.0 ↗ | alpha superhelices › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase | 0.61 | 53.0 | 4.51e-01 | 96.4% | 65.0% |
| 3705419 | 601.1.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin | 0.61 | 46.0 | 4.44e-01 | 81.0% | 89.5% |
| 3895592 | 601.14.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › Hemerythrin › Hemerythrin › Hemerythrin | 0.60 | 42.0 | 3.46e-01 | 73.8% | 53.1% |
| 4943235 | 160.1.1.0 ↗ | alpha superhelices › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase | 0.60 | 52.0 | 4.29e-01 | 96.4% | 63.3% |
| 4352630 | 160.1.1.4 ↗ | alpha superhelices › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase › ATP-synt_VA_C | 0.60 | 52.0 | 4.38e-01 | 96.4% | 67.9% |
| 4949096 | 160.1.1.4 ↗ | alpha superhelices › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase › ATP-synt_VA_C | 0.59 | 52.0 | 4.27e-01 | 98.8% | 71.5% |
| 4401971 | 160.1.1.4 ↗ | alpha superhelices › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase › ATP-synt_VA_C | 0.58 | 50.0 | 4.33e-01 | 100.0% | 67.9% |
| 4966418 | 160.1.1.0 ↗ | alpha superhelices › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase | 0.58 | 50.0 | 4.27e-01 | 100.0% | 69.7% |
| 5054502 | 601.7.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain | 0.57 | 43.0 | 4.08e-01 | 81.0% | 83.0% |
| 3201694 | 192.29.1.52 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › Anthrone_oxy | 0.56 | 41.0 | 3.38e-01 | 81.0% | 97.1% |
| 4280805 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.54 | 37.0 | 3.67e-01 | 71.4% | 67.8% |
| 4478658 | 109.4.1.1421 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_1, TPR_8, TPR_19 | 0.52 | 39.0 | 2.71e-01 | 82.1% | 74.5% |
D2
high
residues 111-175
Domain cluster:
rep: OQ718882.1__WHM52888.1__IOBOPIKK_00083__00081__D5-62
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00959.25 best | Phage_lysozyme | 31.4 | 3.00e-07 | 78.5% | 37.6% |
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4evxA00 | 1.10.1740.240 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › | 0.88 | 73.0 | 6.25e-01 | 93.8% | 58.8% |
| 8hp8A01 | 1.10.530.40 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.82 | 66.0 | 4.93e-01 | 90.8% | 36.6% |
| 6h9dA00 | 1.10.530.40 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.81 | 66.0 | 5.02e-01 | 96.9% | 39.2% |
| 3hdeC00 | 1.10.530.40 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.79 | 68.0 | 4.99e-01 | 93.8% | 38.4% |
| 152lA00 | 1.10.530.40 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.76 | 64.0 | 4.65e-01 | 89.2% | 42.7% |
| 2anvA00 | 1.10.530.40 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.76 | 67.0 | 5.08e-01 | 96.9% | 43.2% |
| 8b2sA01 | 1.10.530.40 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.73 | 59.0 | 4.47e-01 | 89.2% | 38.3% |
| 5w1eA01 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.55 | 42.0 | 3.15e-01 | 87.7% | 92.5% |
| 4i92A02 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.53 | 44.0 | 3.28e-01 | 100.0% | 53.9% |
| 2qkwB02 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.51 | 43.0 | 3.19e-01 | 100.0% | 55.3% |
ECOD (19)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3974990 | 235.1.1.6 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Phage_lysozyme | 0.89 | 74.0 | 6.03e-01 | 93.8% | 51.8% |
| 3944610 | 235.1.1.6 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Phage_lysozyme | 0.88 | 73.0 | 5.30e-01 | 95.4% | 35.8% |
| 2771202 | 235.1.1.6 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Phage_lysozyme | 0.83 | 74.0 | 5.39e-01 | 96.9% | 38.7% |
| 2488339 | 235.1.1.6 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Phage_lysozyme | 0.81 | 66.0 | 5.02e-01 | 96.9% | 39.2% |
| 3033455 | 235.1.1.6 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Phage_lysozyme | 0.81 | 69.0 | 5.11e-01 | 96.9% | 37.9% |
| 2524005 | 235.1.1.6 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Phage_lysozyme | 0.80 | 66.0 | 4.77e-01 | 89.2% | 46.0% |
| 2439620 | 1.1.15.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like | 0.80 | 67.0 | 3.97e-01 | 89.2% | 15.8% |
| 3949298 | 235.1.1.6 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Phage_lysozyme | 0.80 | 69.0 | 4.91e-01 | 93.8% | 34.3% |
| 2665501 | 235.1.1.6 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Phage_lysozyme | 0.80 | 66.0 | 4.73e-01 | 89.2% | 42.1% |
| 156965 | 235.1.1.7 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Phage_lysozyme,Gp5_OB | 0.79 | 66.0 | 4.46e-01 | 89.2% | 34.2% |
| 159686 | 235.1.1.6 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Phage_lysozyme | 0.76 | 67.0 | 5.09e-01 | 96.9% | 43.2% |
| 4019669 | 235.1.1.6 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Phage_lysozyme | 0.73 | 64.0 | 4.81e-01 | 96.9% | 41.3% |
| 4947543 | 330.7.1.2 ↗ | a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain › HicA_toxin | 0.71 | 35.0 | 3.32e-01 | 98.5% | 40.5% |
| 3290876 | 223.1.1.4 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › IclR | 0.55 | 42.0 | 3.20e-01 | 84.6% | 93.5% |
| 4010522 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.53 | 33.0 | 3.04e-01 | 70.8% | 44.4% |
| 3283325 | 223.1.1.4 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › IclR | 0.53 | 40.0 | 3.04e-01 | 83.1% | 95.7% |
| 3171117 | 264.2.1.0 ↗ | beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain | 0.52 | 41.0 | 3.76e-01 | 93.8% | 96.8% |
| 4080054 | 223.1.1.4 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › IclR | 0.52 | 40.0 | 3.07e-01 | 86.2% | 95.8% |
| 312351 | 223.1.1.4 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › IclR | 0.50 | 39.0 | 3.02e-01 | 89.2% | 93.5% |