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IMGVR_UViG_3300010346_002606-3300010346-Ga0116239_1001062214

Arc-Vir

Identity

Accession:: IMGVR_UViG_3300010346_002606-3300010346-Ga0116239_1001062214 ↗
Kingdom:: archaea

Quality

88.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 35-97_483-616

PDB

Domain cluster: rep: KT624200.1__AMM44842.1__SP15_043__00044__D22-84_198-292

CATH (22)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3foaB01	3.40.50.11780	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold ›	0.78	63.0	6.04e-01	100.0%	74.5%
1di0A00	3.40.50.960	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Lumazine/riboflavin synthase	0.64	36.0	4.11e-01	77.2%	73.0%
7xrjA01	3.40.50.720	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain	0.63	35.0	4.44e-01	100.0%	92.2%
1darA01	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.62	38.0	3.48e-01	100.0%	45.7%
3geeA03	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.61	32.0	3.85e-01	99.0%	73.7%
1o7jA02	3.40.50.40	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold ›	0.60	25.0	3.28e-01	99.0%	67.0%
7essA01	3.30.420.140	Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › YqgF/RNase H-like domain	0.60	29.0	3.52e-01	73.6%	67.4%
1mkyA01	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.59	37.0	4.12e-01	99.5%	78.2%
6tm3A02	3.40.50.720	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain	0.57	33.0	3.74e-01	99.0%	72.8%
1aipA01	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.57	37.0	3.85e-01	100.0%	69.1%
3h6eB01	3.30.420.40	Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain	0.57	29.0	3.94e-01	72.1%	94.9%
1mkyA02	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.56	36.0	4.09e-01	100.0%	83.6%
3oyzA01	3.20.20.60	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphoenolpyruvate-binding domains	0.55	38.0	3.43e-01	100.0%	51.1%
2gt1A02	3.40.50.2000	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B;	0.55	33.0	3.60e-01	100.0%	71.9%
4k05A01	3.40.50.12170	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Uncharacterised protein PF07075, DUF1343	0.54	42.0	3.99e-01	100.0%	69.6%
4mdaA00	3.30.420.10	Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H	0.53	29.0	2.96e-01	74.1%	50.5%
2nlyA00	3.20.20.370	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycoside hydrolase/deacetylase	0.53	32.0	3.10e-01	100.0%	51.9%
2ddmB00	3.40.1190.20	Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase	0.52	42.0	3.77e-01	98.5%	61.3%
6r8gA01	3.40.50.720	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain	0.52	34.0	3.92e-01	100.0%	90.8%
1udxA02	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.51	36.0	3.80e-01	99.0%	80.5%
5e9fD01	3.20.20.60	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphoenolpyruvate-binding domains	0.51	39.0	3.07e-01	100.0%	38.7%
1cr2A00	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.50	33.0	3.14e-01	99.0%	54.0%

ECOD (20)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4995822	2499.2.1.1 ↗	a/b three-layered sandwiches › Subtilisin-like › Domain III of tail sheath protein Gp18 › Domain III of tail sheath protein Gp18 › Phage_sheath_1	0.84	59.0	5.37e-01	100.0%	55.7%
3948874	2499.2.1.6 ↗	a/b three-layered sandwiches › Subtilisin-like › Domain III of tail sheath protein Gp18 › Domain III of tail sheath protein Gp18 › DUF3383	0.72	50.0	4.68e-01	100.0%	57.9%
5039447	7604.1.1.1 ↗	a/b three-layered sandwiches › a/b domain in Acetophenone carboxylase (Apc) alpha subunit › a/b domain in Acetophenone carboxylase (Apc) alpha subunit › a/b domain in Acetophenone carboxylase (Apc) alpha subunit › Hydant_A_N	0.61	37.0	4.31e-01	74.6%	84.3%
5050328	2002.1.1.120 ↗	a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM	0.60	34.0	2.89e-01	100.0%	33.5%
4200538	7507.1.1.1 ↗	a/b three-layered sandwiches › Glutaminase/Asparaginase C-terminal domain › Glutaminase/Asparaginase C-terminal domain › Glutaminase/Asparaginase C-terminal domain › Asparaginase_C	0.60	25.0	3.22e-01	99.0%	64.6%
3722859	7507.1.1.1 ↗	a/b three-layered sandwiches › Glutaminase/Asparaginase C-terminal domain › Glutaminase/Asparaginase C-terminal domain › Glutaminase/Asparaginase C-terminal domain › Asparaginase_C	0.58	25.0	3.08e-01	99.0%	61.7%
4103811	2003.1.8.4 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › MurCD/PglD N-terminal domain-like › MurD-like_N	0.56	28.0	3.97e-01	72.1%	100.0%
4087124	2003.1.5.13 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Spermine_synth	0.56	37.0	3.61e-01	100.0%	60.9%
4957276	7507.1.1.1 ↗	a/b three-layered sandwiches › Glutaminase/Asparaginase C-terminal domain › Glutaminase/Asparaginase C-terminal domain › Glutaminase/Asparaginase C-terminal domain › Asparaginase_C	0.55	27.0	3.18e-01	75.1%	66.2%
4959832	2005.1.1.3 ↗	a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp	0.54	34.0	4.05e-01	76.6%	91.8%
None	—		0.54	39.0	3.82e-01	75.1%	76.4%
3263806	2004.1.1.474 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Dynamin_N, MMR_HSR1	0.54	43.0	3.90e-01	100.0%	62.6%
4976046	2004.1.1.73 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1	0.53	35.0	3.89e-01	99.0%	81.9%
None	—		0.52	34.0	4.00e-01	100.0%	92.1%
3386738	2003.1.1.2 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Ldh_1_N	0.52	35.0	4.05e-01	100.0%	94.3%
4591667	2003.1.1.2 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Ldh_1_N	0.51	34.0	3.95e-01	100.0%	92.9%
4941917	2005.1.1.70 ↗	a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › DUF7411	0.51	36.0	3.61e-01	75.1%	70.5%
3740733	2003.6.1.5 ↗	a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › Phos_pyr_kin	0.50	41.0	3.46e-01	99.0%	51.2%
4440720	2004.1.1.73 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1	0.50	38.0	3.85e-01	95.9%	77.0%
3417335	2004.1.1.56 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › NB-ARC	0.50	31.0	3.32e-01	80.2%	67.4%

D2 high residues 364-462

PDB

Domain cluster: rep: IMGVR_UViG_3300009688_000507-3300009688-Ga0116176_100075861__D456-550

D3 medium residues 98-173_267-359

PDB

Domain cluster: representative

D4 medium residues 174-266_463-482

PDB

Domain cluster: rep: pre3_saliva_scaffold_18_prodigal-single.1__X__X__00213__D208-252_383-409_839-847

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4026990	11.1.1.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like	0.52	23.0	2.71e-01	97.3%	56.0%