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IMGVR_UViG_3300010347_002547-3300010347-Ga0116238_1000192033
Arc-VirIMGVR_UViG_3300010347_002547-3300010347-Ga0116238_1000192033
Identity
- Kingdom:
- archaea
Quality
89.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-151
Domain cluster:
rep: IMGVR_UViG_3300038312_000168-3300038312-Ga0134836_000233_40918_41553__D2-137
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02732.22 best | ERCC4 | 42.5 | 8.70e-11 | 91.3% | 67.9% |
CATH (41)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2ph7A02 | 3.40.50.10670 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › af2093 domain | 0.70 | 42.0 | 5.14e-01 | 73.3% | 93.8% |
| 3loqA02 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.64 | 38.0 | 4.10e-01 | 95.3% | 67.4% |
| 2vldA02 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.63 | 44.0 | 5.08e-01 | 84.0% | 98.2% |
| 2clsA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.63 | 56.0 | 5.34e-01 | 98.0% | 97.2% |
| 4basA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.61 | 56.0 | 5.38e-01 | 100.0% | 98.3% |
| 2btoA01 | 3.40.50.1440 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Tubulin/FtsZ, GTPase domain | 0.61 | 55.0 | 4.60e-01 | 100.0% | 95.0% |
| 1z2aA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.60 | 54.0 | 5.24e-01 | 98.7% | 98.8% |
| 1wteA02 | 3.40.1560.10 | Alpha Beta › 3-Layer(aba) Sandwich › type ii restriction endonuclease, domain 2 › type ii restriction endonuclease, domain 2 | 0.59 | 47.0 | 5.09e-01 | 95.3% | 100.0% |
| 3zidB00 | 3.40.50.1440 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Tubulin/FtsZ, GTPase domain | 0.59 | 54.0 | 4.13e-01 | 100.0% | 55.8% |
| 1byuB00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.59 | 54.0 | 4.75e-01 | 100.0% | 75.3% |
| 3v3tA01 | 3.40.50.1440 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Tubulin/FtsZ, GTPase domain | 0.58 | 53.0 | 4.80e-01 | 100.0% | 96.1% |
| 3bm3A00 | 3.40.91.80 | Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › | 0.58 | 52.0 | 4.29e-01 | 96.0% | 61.8% |
| 3c5hA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.57 | 52.0 | 4.50e-01 | 99.3% | 95.7% |
| 2xkbL00 | 3.40.50.1440 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Tubulin/FtsZ, GTPase domain | 0.57 | 51.0 | 3.85e-01 | 100.0% | 60.2% |
| 4jgiB02 | 3.40.50.280 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Cobalamin-binding domain | 0.56 | 44.0 | 4.71e-01 | 96.0% | 96.8% |
| 4rgyA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.56 | 50.0 | 4.33e-01 | 98.0% | 86.9% |
| 1r0sA02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.56 | 41.0 | 4.29e-01 | 90.7% | 84.8% |
| 2ajtA01 | 3.40.50.10940 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.56 | 51.0 | 4.85e-01 | 100.0% | 94.9% |
| 4dqlA03 | 3.40.50.80 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module | 0.56 | 38.0 | 3.76e-01 | 92.7% | 64.6% |
| 3ibsA00 | 3.40.50.410 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › von Willebrand factor, type A domain | 0.55 | 50.0 | 4.51e-01 | 100.0% | 99.0% |
| 3pvsB01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.55 | 43.0 | 4.39e-01 | 82.0% | 85.4% |
| 6p8vA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.55 | 44.0 | 3.92e-01 | 84.0% | 88.2% |
| 3simA00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.55 | 43.0 | 3.53e-01 | 82.0% | 89.8% |
| 1xo1A02 | 3.40.50.1010 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease | 0.55 | 38.0 | 3.75e-01 | 70.0% | 100.0% |
| 3kjhA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.55 | 49.0 | 4.13e-01 | 98.7% | 99.2% |
| 2eo0B00 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.54 | 42.0 | 4.50e-01 | 96.0% | 97.6% |
| 3nntA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.54 | 43.0 | 3.64e-01 | 84.7% | 84.8% |
| 2ymbA00 | 3.30.870.30 | Alpha Beta › 2-Layer Sandwich › Endonuclease; Chain A › MITD, C-terminal phospholipase D-like domain | 0.53 | 39.0 | 3.88e-01 | 95.3% | 73.2% |
| 3f2vA00 | 3.40.50.360 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain | 0.53 | 46.0 | 4.41e-01 | 95.3% | 99.4% |
| 2r60A02 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.53 | 43.0 | 3.83e-01 | 90.7% | 60.5% |
| 6y9tB01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.53 | 47.0 | 3.51e-01 | 98.7% | 95.5% |
| 2gupA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.53 | 32.0 | 3.79e-01 | 81.3% | 90.7% |
| 6gvdA02 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.53 | 47.0 | 3.68e-01 | 98.7% | 90.2% |
| 2jaxA02 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.51 | 34.0 | 3.53e-01 | 76.0% | 72.1% |
| 2l82A00 | 3.40.50.11230 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.51 | 47.0 | 4.59e-01 | 100.0% | 95.1% |
| 4ha7B00 | 3.40.430.10 | Alpha Beta › 3-Layer(aba) Sandwich › Dihydrofolate Reductase, subunit A › Dihydrofolate Reductase, subunit A | 0.51 | 40.0 | 3.60e-01 | 82.0% | 60.5% |
| 4a8jA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.51 | 45.0 | 3.62e-01 | 94.0% | 75.8% |
| 4tr3A00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.51 | 41.0 | 3.85e-01 | 86.7% | 76.6% |
| 3r6hA00 | 3.90.226.10 | Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 | 0.51 | 45.0 | 3.93e-01 | 96.7% | 85.3% |
| 1ur3M00 | 3.20.20.100 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › NADP-dependent oxidoreductase domain | 0.50 | 43.0 | 3.47e-01 | 93.3% | 81.8% |
| 2l5oA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.50 | 37.0 | 3.73e-01 | 95.3% | 76.0% |
ECOD (74)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5008608 | 2008.1.1.7 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › ERCC4 | 0.85 | 77.0 | 7.73e-01 | 100.0% | 93.3% |
| 4933501 | 2008.1.1.7 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › ERCC4 | 0.84 | 77.0 | 7.91e-01 | 100.0% | 99.3% |
| 3895050 | 2008.1.1.7 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › ERCC4 | 0.83 | 73.0 | 6.99e-01 | 100.0% | 80.6% |
| 3217738 | 2008.1.1.12 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Rad10 | 0.82 | 65.0 | 6.71e-01 | 100.0% | 87.9% |
| 3173063 | 2008.1.1.12 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Rad10 | 0.81 | 62.0 | 6.93e-01 | 96.0% | 98.3% |
| 3665653 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.81 | 67.0 | 6.94e-01 | 98.0% | 92.9% |
| 3883599 | 2008.1.1.68 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PND | 0.80 | 65.0 | 6.83e-01 | 100.0% | 94.1% |
| 3273735 | 2008.1.1.7 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › ERCC4 | 0.79 | 75.0 | 6.59e-01 | 100.0% | 84.8% |
| 3571634 | 2008.1.1.89 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › SCRE | 0.78 | 66.0 | 6.44e-01 | 100.0% | 83.1% |
| 5077535 | 2008.1.1.7 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › ERCC4 | 0.77 | 73.0 | 6.97e-01 | 100.0% | 90.0% |
| 3255743 | 2008.1.1.7 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › ERCC4 | 0.76 | 67.0 | 6.69e-01 | 98.0% | 89.7% |
| 3915031 | 2008.1.1.7 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › ERCC4 | 0.76 | 70.0 | 6.24e-01 | 100.0% | 85.2% |
| 3937765 | 2008.1.1.7 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › ERCC4 | 0.75 | 70.0 | 6.57e-01 | 100.0% | 82.9% |
| 3220592 | 2008.1.1.7 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › ERCC4 | 0.75 | 66.0 | 6.51e-01 | 98.0% | 86.9% |
| 4507166 | 2008.1.1.149 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PF30140 | 0.75 | 63.0 | 6.49e-01 | 98.0% | 94.3% |
| 3702525 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.75 | 69.0 | 6.87e-01 | 100.0% | 94.8% |
| 3736568 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.72 | 64.0 | 6.35e-01 | 100.0% | 91.6% |
| 3500257 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.72 | 66.0 | 5.47e-01 | 100.0% | 86.9% |
| 4978721 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.68 | 49.0 | 5.53e-01 | 86.7% | 97.4% |
| 5057728 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.67 | 51.0 | 5.57e-01 | 88.0% | 95.2% |
| 4983181 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.67 | 46.0 | 5.10e-01 | 90.7% | 87.5% |
| 4927057 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.66 | 54.0 | 5.80e-01 | 93.3% | 100.0% |
| 5077488 | 2004.1.1.19 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras | 0.66 | 60.0 | 5.61e-01 | 98.0% | 98.9% |
| 5056661 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.66 | 47.0 | 4.79e-01 | 95.3% | 73.3% |
| 5074941 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.64 | 46.0 | 5.23e-01 | 92.0% | 100.0% |
| 4941226 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.64 | 45.0 | 4.85e-01 | 96.0% | 85.3% |
| 4959003 | 2008.1.1.114 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF4143 | 0.64 | 40.0 | 4.80e-01 | 85.3% | 97.9% |
| 4965092 | 2008.1.1.228 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF5787 | 0.63 | 48.0 | 4.30e-01 | 88.0% | 56.5% |
| 4146128 | 2495.1.1.1 ↗ | a/b three-layered sandwiches › Cell-division inhibitor MinC, N-terminal domain › Cell-division inhibitor MinC, N-terminal domain › Cell-division inhibitor MinC, N-terminal domain › MinC_N | 0.63 | 35.0 | 4.43e-01 | 85.3% | 94.1% |
| 4927826 | 2004.1.1.206 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_31 | 0.62 | 54.0 | 4.36e-01 | 94.7% | 98.6% |
| 4949772 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.62 | 42.0 | 4.90e-01 | 81.3% | 98.1% |
| 5025921 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.61 | 43.0 | 4.96e-01 | 75.3% | 98.2% |
| 4941784 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.61 | 50.0 | 5.32e-01 | 87.3% | 97.0% |
| 3840702 | 2004.1.1.19 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras | 0.61 | 56.0 | 4.94e-01 | 100.0% | 92.1% |
| 3178940 | 2004.1.1.19 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras | 0.61 | 55.0 | 5.08e-01 | 100.0% | 91.3% |
| 4257464 | 7512.1.1.3 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glycos_transf_1 | 0.61 | 44.0 | 4.18e-01 | 100.0% | 62.2% |
| 5003652 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.60 | 44.0 | 4.95e-01 | 82.7% | 96.5% |
| 4882357 | 2003.1.6.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Tubulin nucleotide-binding domain-like › Tubulin | 0.60 | 53.0 | 4.53e-01 | 96.7% | 97.5% |
| 4967964 | 2008.1.1.141 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_19 | 0.59 | 42.0 | 4.61e-01 | 92.7% | 88.0% |
| 3602674 | 2008.1.1.114 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF4143 | 0.59 | 39.0 | 4.63e-01 | 80.7% | 100.0% |
| 5009806 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.59 | 51.0 | 4.67e-01 | 96.0% | 90.2% |
| 3102571 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.59 | 50.0 | 5.11e-01 | 93.3% | 96.5% |
| 3656599 | 7514.1.1.1 ↗ | a/b three-layered sandwiches › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › NAD_binding_1 | 0.59 | 33.0 | 4.00e-01 | 83.3% | 85.3% |
| 4947990 | 2008.1.1.218 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › HTH_3 | 0.59 | 42.0 | 4.67e-01 | 92.0% | 94.8% |
| 3738243 | 2003.1.1.3 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › adh_short | 0.59 | 52.0 | 4.35e-01 | 97.3% | 81.9% |
| 5073524 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.58 | 50.0 | 5.00e-01 | 96.7% | 89.0% |
| 5049517 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.58 | 49.0 | 4.65e-01 | 90.7% | 89.4% |
| 4988932 | 2008.1.1.141 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_19 | 0.58 | 41.0 | 4.42e-01 | 92.7% | 87.2% |
| 4971800 | 246.2.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos | 0.58 | 52.0 | 4.10e-01 | 100.0% | 97.2% |
| 5064957 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.58 | 50.0 | 5.09e-01 | 96.7% | 94.7% |
| 5052189 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.58 | 46.0 | 4.58e-01 | 86.0% | 80.0% |
| 1787656 | 2003.1.6.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Tubulin nucleotide-binding domain-like › Tubulin | 0.57 | 51.0 | 4.73e-01 | 96.0% | 98.9% |
| 5041799 | 2008.1.1.220 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_10 | 0.57 | 39.0 | 4.09e-01 | 82.7% | 74.3% |
| 3256073 | 2007.15.1.6 ↗ | a/b three-layered sandwiches › Flavodoxin-like › N-deoxyribosyltransferase › N-deoxyribosyltransferase › DUF4062 | 0.57 | 51.0 | 4.68e-01 | 100.0% | 99.5% |
| 3879317 | 2003.1.1.79 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › ISPD_C | 0.56 | 49.0 | 4.87e-01 | 97.3% | 91.9% |
| 4945759 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.56 | 43.0 | 4.48e-01 | 81.3% | 86.4% |
| 3733922 | 247.1.1.42 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B, Lactamase_B_2, Lactamase_B_4 | 0.56 | 51.0 | 3.21e-01 | 100.0% | 50.2% |
| 136176 | 2006.1.6.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › VWA | 0.55 | 50.0 | 4.51e-01 | 100.0% | 99.0% |
| None | — | 0.55 | 50.0 | 4.16e-01 | 100.0% | 98.5% | |
| 3726775 | 7570.1.1.0 ↗ | a/b three-layered sandwiches › MurD-like peptide ligases, peptide-binding domain › MurD-like peptide ligases, peptide-binding domain › MurD-like peptide ligases, peptide-binding domain | 0.55 | 48.0 | 4.50e-01 | 95.3% | 81.6% |
| 3244232 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.55 | 48.0 | 4.37e-01 | 98.7% | 91.4% |
| 3972296 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.55 | 45.0 | 3.50e-01 | 87.3% | 92.0% |
| 4969771 | 2007.1.11.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › L-fucose isomerase, N-terminal and second domains | 0.55 | 49.0 | 4.93e-01 | 100.0% | 99.4% |
| 3392481 | 109.4.1.1434 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TRAPPC9-Trs120, PF26251 | 0.54 | 49.0 | 3.43e-01 | 100.0% | 35.4% |
| 3575441 | 7579.1.1.3 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Peptidase_S9 | 0.54 | 48.0 | 3.89e-01 | 98.7% | 77.7% |
| 3177889 | 2003.1.1.3 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › adh_short | 0.54 | 49.0 | 3.99e-01 | 100.0% | 71.8% |
| 3416893 | 2008.6.1.1 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Acetyl-CoA carboxylase AC4 and AC5 domains › Acetyl-CoA carboxylase AC4 and AC5 domains › ACC_central | 0.53 | 44.0 | 3.87e-01 | 90.0% | 93.9% |
| 3382586 | 7514.1.1.1 ↗ | a/b three-layered sandwiches › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › NAD_binding_1 | 0.53 | 38.0 | 3.69e-01 | 93.3% | 66.7% |
| 3343894 | 2007.6.1.3 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Ribosomal protein S2/SIS domain › Ribosomal protein S2/SIS domain › PGI | 0.53 | 43.0 | 3.97e-01 | 87.3% | 91.8% |
| 3340982 | 2007.6.1.3 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Ribosomal protein S2/SIS domain › Ribosomal protein S2/SIS domain › PGI | 0.52 | 44.0 | 3.64e-01 | 93.3% | 66.3% |
| 4979029 | 246.2.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos | 0.52 | 46.0 | 4.22e-01 | 96.7% | 99.0% |
| 4969007 | 7575.1.1.3 ↗ | a/b three-layered sandwiches › Caspase-like › Caspase-like › Caspase-like › Peptidase_C13 | 0.51 | 46.0 | 3.72e-01 | 98.0% | 89.1% |
| 290550 | 2002.1.1.16 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Bac_luciferase | 0.51 | 46.0 | 3.62e-01 | 100.0% | 91.9% |
| 3003998 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.50 | 45.0 | 3.90e-01 | 96.0% | 89.0% |
D2
high
residues 162-202
Domain cluster:
representative
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3majA01 | 3.40.50.450 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.76 | 66.0 | 3.93e-01 | 100.0% | 16.4% |
| 3zdbA02 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.73 | 60.0 | 4.86e-01 | 100.0% | 62.9% |
| 2a1jB01 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.72 | 59.0 | 5.15e-01 | 100.0% | 84.1% |
| 2vqeM01 | 1.10.8.50 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.72 | 59.0 | 5.03e-01 | 95.1% | 78.9% |
| 4i2aA02 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.71 | 59.0 | 5.36e-01 | 100.0% | 84.7% |
| 4bxoB02 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.71 | 58.0 | 5.14e-01 | 100.0% | 86.2% |
| 1bpbA01 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.71 | 58.0 | 5.34e-01 | 100.0% | 82.8% |
| 5k97A02 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.70 | 61.0 | 5.20e-01 | 100.0% | 70.6% |
| 2va8A04 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.68 | 55.0 | 5.16e-01 | 100.0% | 98.2% |
| 2n80A00 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.65 | 50.0 | 4.04e-01 | 100.0% | 41.5% |
| 3ez2A01 | 1.10.1660.30 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.61 | 47.0 | 4.17e-01 | 95.1% | 85.7% |
ECOD (25)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5048009 | 102.1.1.27 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 | 0.81 | 68.0 | 5.81e-01 | 100.0% | 78.6% |
| 5032066 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.79 | 66.0 | 5.69e-01 | 100.0% | 80.0% |
| 5041781 | 102.1.1.24 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_2 | 0.78 | 67.0 | 5.81e-01 | 100.0% | 83.1% |
| 4025026 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.78 | 66.0 | 5.95e-01 | 100.0% | 96.7% |
| 3743102 | 102.1.1.27 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 | 0.78 | 65.0 | 5.47e-01 | 100.0% | 77.3% |
| 5032485 | 102.1.1.27 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 | 0.77 | 63.0 | 5.62e-01 | 100.0% | 84.6% |
| 4981590 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.77 | 63.0 | 5.71e-01 | 100.0% | 95.0% |
| 1546110 | 102.1.1.39 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › DprA_N | 0.76 | 66.0 | 5.23e-01 | 100.0% | 56.5% |
| 3787227 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.75 | 66.0 | 5.41e-01 | 100.0% | 65.3% |
| 3335893 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.75 | 63.0 | 5.31e-01 | 100.0% | 64.0% |
| 4941530 | 102.1.1.27 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 | 0.75 | 61.0 | 5.22e-01 | 100.0% | 76.0% |
| 5035601 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.74 | 60.0 | 5.50e-01 | 100.0% | 93.3% |
| 5071974 | 102.1.1.24 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_2 | 0.74 | 59.0 | 5.45e-01 | 100.0% | 96.7% |
| 3170745 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.72 | 61.0 | 5.11e-01 | 100.0% | 66.7% |
| 2772131 | 102.1.1.21 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › DNA_pol_lambd_f | 0.71 | 58.0 | 5.30e-01 | 100.0% | 79.7% |
| 4998924 | 102.1.1.27 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 | 0.71 | 58.0 | 5.08e-01 | 100.0% | 79.4% |
| 2568242 | 102.1.1.21 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › DNA_pol_lambd_f | 0.71 | 58.0 | 5.24e-01 | 100.0% | 80.3% |
| 4943719 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.70 | 61.0 | 4.42e-01 | 100.0% | 37.5% |
| 4980814 | 102.5.1.1 ↗ | alpha arrays › HhH/H2TH › SAM-like subdomain in Sec63-like proteins › SAM-like subdomain in Sec63-like proteins › HHH_5 | 0.69 | 52.0 | 5.25e-01 | 82.9% | 87.5% |
| 4192182 | 102.1.1.10 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › DNA_ligase_ZBD,HHH_2 | 0.69 | 56.0 | 3.74e-01 | 100.0% | 37.4% |
| 4495176 | 102.1.1.24 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_2 | 0.69 | 57.0 | 4.75e-01 | 100.0% | 73.8% |
| 3908409 | 102.1.1.27 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 | 0.67 | 55.0 | 4.69e-01 | 100.0% | 78.7% |
| 4945133 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.66 | 56.0 | 4.95e-01 | 100.0% | 92.1% |
| 5050871 | 102.1.1.27 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 | 0.66 | 53.0 | 4.81e-01 | 100.0% | 93.7% |
| 4113509 | 102.1.1.51 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › IMS_HHH_1 | 0.60 | 49.0 | 4.28e-01 | 100.0% | 75.7% |