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IMGVR_UViG_3300010347_002547-3300010347-Ga0116238_1000192040
Arc-VirIMGVR_UViG_3300010347_002547-3300010347-Ga0116238_1000192040
Identity
- Kingdom:
- archaea
Quality
56.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-55
D2
medium
residues 85-147
Domain cluster:
representative
CATH (33)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4i8oA01 | 3.30.310.240 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Bacterial toxin RNase RnlA/LsoA, N-terminal domain | 0.64 | 49.0 | 4.44e-01 | 84.1% | 92.1% |
| 3ne5B01 | 2.40.420.20 | Mainly Beta › Beta Barrel › conserved putative lor/sdh protein from methanococcus maripaludis s2 fold › | 0.62 | 40.0 | 3.57e-01 | 77.8% | 47.7% |
| 1wmhA00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.62 | 34.0 | 3.07e-01 | 87.3% | 39.8% |
| 3zqmA00 | 6.10.140.2160 | Special › Helix non-globular › Helix Hairpins › | 0.61 | 44.0 | 4.59e-01 | 87.3% | 83.1% |
| 4rt5A00 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.61 | 42.0 | 3.60e-01 | 100.0% | 45.5% |
| 1b69A00 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.60 | 44.0 | 4.35e-01 | 96.8% | 72.5% |
| 2a5hA03 | 6.20.120.40 | Special › Other non-globular › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.60 | 30.0 | 3.09e-01 | 77.8% | 46.8% |
| 2py5A05 | 4.10.80.20 | Few Secondary Structures › Irregular › Rhinovirus 14, subunit 4 › DNA polymerase; domain 5 | 0.60 | 28.0 | 3.65e-01 | 88.9% | 83.3% |
| 4kghA00 | 3.15.10.10 | Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 | 0.60 | 45.0 | 3.35e-01 | 87.3% | 82.4% |
| 1nubA01 | 3.30.60.30 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.59 | 43.0 | 3.96e-01 | 77.8% | 68.3% |
| 5jk0B01 | 1.10.443.10 | Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core | 0.59 | 49.0 | 3.72e-01 | 98.4% | 76.9% |
| 3ic8A01 | 3.40.30.110 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › | 0.59 | 40.0 | 2.99e-01 | 73.0% | 35.0% |
| 7npaA02 | 3.30.70.3340 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 43.0 | 3.93e-01 | 98.4% | 61.2% |
| 1z9hA02 | 6.20.200.30 | Special › Other non-globular › Defensin A-like › | 0.56 | 33.0 | 3.59e-01 | 84.1% | 79.1% |
| 1vbkA01 | 3.30.70.1510 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › THUMP domain-like | 0.55 | 41.0 | 3.84e-01 | 100.0% | 63.9% |
| 4ewcA01 | 2.20.25.560 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.54 | 36.0 | 3.92e-01 | 71.4% | 83.0% |
| 1h2iA01 | 3.30.390.80 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › DNA repair protein Rad52/59/22 | 0.54 | 42.0 | 3.27e-01 | 87.3% | 68.9% |
| 1ywlA00 | 3.40.1440.10 | Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.54 | 30.0 | 2.62e-01 | 88.9% | 34.4% |
| 1y96A00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.54 | 38.0 | 3.53e-01 | 77.8% | 76.7% |
| 1r77A00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.54 | 46.0 | 3.92e-01 | 93.7% | 96.0% |
| 3ednA01 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.53 | 39.0 | 3.26e-01 | 85.7% | 70.9% |
| 3jcuO01 | 2.40.160.30 | Mainly Beta › Beta Barrel › Porin › Photosystem II, cytochrome c-550 precursor | 0.53 | 41.0 | 2.98e-01 | 84.1% | 77.8% |
| 1hp7A01 | 2.30.39.10 | Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 | 0.53 | 32.0 | 2.81e-01 | 81.0% | 37.9% |
| 1xksA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.53 | 36.0 | 2.31e-01 | 73.0% | 21.9% |
| 1yx1A00 | 3.20.20.150 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes | 0.53 | 43.0 | 2.95e-01 | 95.2% | 49.2% |
| 4zpjA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.52 | 44.0 | 3.20e-01 | 92.1% | 92.4% |
| 2jkgA00 | 3.30.450.30 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic | 0.52 | 39.0 | 2.98e-01 | 84.1% | 100.0% |
| 3c96A01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.52 | 36.0 | 2.73e-01 | 74.6% | 59.5% |
| 5iroD00 | 2.60.40.3530 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.52 | 41.0 | 3.55e-01 | 88.9% | 68.6% |
| 2a6hC03 | 3.90.1110.10 | Alpha Beta › Alpha-Beta Complex › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3 › RNA polymerase Rpb2, domain 2 | 0.51 | 39.0 | 2.95e-01 | 88.9% | 38.3% |
| 4qrlA00 | 2.40.128.280 | Mainly Beta › Beta Barrel › Lipocalin › | 0.51 | 37.0 | 3.16e-01 | 79.4% | 100.0% |
| 2uvaG03 | 3.30.70.3320 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 43.0 | 3.70e-01 | 100.0% | 68.5% |
| 1a31A03 | 3.90.15.10 | Alpha Beta › Alpha-Beta Complex › Topoisomerase I; Chain A, domain 3 › Topoisomerase I; Chain A, domain 3 | 0.50 | 42.0 | 3.27e-01 | 96.8% | 67.3% |
ECOD (26)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3999534 | 391.1.2.9 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › Fn1_2 | 0.67 | 34.0 | 4.02e-01 | 74.6% | 72.5% |
| 3255946 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.65 | 35.0 | 3.27e-01 | 74.6% | 42.5% |
| 3585186 | 391.1.1.0 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module | 0.60 | 30.0 | 3.73e-01 | 73.0% | 77.1% |
| 3212968 | 220.1.1.22 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C | 0.60 | 33.0 | 2.58e-01 | 74.6% | 24.4% |
| 3928430 | 4.1.1.223 ↗ | beta barrels › SH3 › SH3 › SH3 › KIF2A-like_1st | 0.58 | 43.0 | 4.25e-01 | 84.1% | 95.7% |
| 5057283 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.58 | 46.0 | 3.78e-01 | 95.2% | 91.9% |
| 3592085 | 4015.1.1.1 ↗ | alpha complex topology › alpha-helical domain in sec1/munc18-like (SM) proteins › alpha-helical domain in sec1/munc18-like (SM) proteins › alpha-helical domain in sec1/munc18-like (SM) proteins › Sec1 | 0.57 | 41.0 | 2.75e-01 | 79.4% | 18.5% |
| 4453818 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.57 | 47.0 | 3.70e-01 | 98.4% | 90.0% |
| 3839627 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.56 | 45.0 | 3.61e-01 | 90.5% | 97.8% |
| 3929257 | 220.4.1.0 ↗ | beta barrels › PH domain-like › second barrel domain in viral glycoproteins › second barrel domain in viral glycoproteins | 0.55 | 39.0 | 3.62e-01 | 74.6% | 100.0% |
| 3288795 | 2003.1.3.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain | 0.55 | 39.0 | 2.60e-01 | 77.8% | 49.5% |
| 3427055 | 5.1.11.13 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › Beta-prop_RIC1_2nd | 0.54 | 41.0 | 2.34e-01 | 82.5% | 17.9% |
| 4975323 | 331.1.1.0 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like | 0.54 | 42.0 | 3.82e-01 | 87.3% | 74.4% |
| 3839222 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.54 | 44.0 | 3.57e-01 | 96.8% | 96.4% |
| 5002505 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.54 | 40.0 | 4.13e-01 | 84.1% | 86.7% |
| 4004424 | 304.48.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 | 0.53 | 45.0 | 2.86e-01 | 100.0% | 39.7% |
| 4224041 | 4.6.1.2 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC | 0.53 | 39.0 | 3.77e-01 | 82.5% | 82.7% |
| 3508428 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.53 | 39.0 | 2.90e-01 | 81.0% | 47.8% |
| 5077287 | 304.139.1.2 ↗ | a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7/Csa2-related › RAMPs | 0.52 | 41.0 | 2.84e-01 | 92.1% | 71.4% |
| 5044666 | 101.1.8.2 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Topoisom_I | 0.52 | 41.0 | 3.27e-01 | 96.8% | 90.0% |
| 3589784 | 2003.6.1.5 ↗ | a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › Phos_pyr_kin | 0.52 | 39.0 | 2.68e-01 | 87.3% | 90.4% |
| 3469215 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.51 | 43.0 | 2.62e-01 | 98.4% | 35.8% |
| 3579519 | 391.1.1.7 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › Fn1_2 | 0.51 | 35.0 | 3.58e-01 | 76.2% | 75.0% |
| 3973159 | 101.1.8.0 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes | 0.51 | 44.0 | 3.38e-01 | 98.4% | 62.0% |
| 3853273 | 327.11.2.27 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_Vigilin | 0.51 | 37.0 | 4.03e-01 | 93.7% | 98.0% |
| 3484161 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.51 | 39.0 | 3.31e-01 | 90.5% | 74.2% |