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IMGVR_UViG_3300010348_001053-3300010348-Ga0116255_1000322722

Arc-Vir

IMGVR_UViG_3300010348_001053-3300010348-Ga0116255_1000322722

Identity

Kingdom:
archaea

Quality

69.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-155
PDB
D2 high residues 157-203
PDB
D3 high residues 217-292
PDB
Domain cluster: rep: IMGVR_UViG_3300000568_000096-3300000568-Draft_1006303631__D183-251
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2fdoA00 3.30.1970.10 Alpha Beta › 2-Layer Sandwich › AF2331-like fold › AF2331-like 0.68 34.0 3.19e-01 71.1% 37.6%
4kt5C00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 41.0 3.95e-01 98.7% 64.8%
3vwoA02 2.10.70.40 Mainly Beta › Ribbon › Complement Module; domain 1 › peptidoglycan hydrolase 0.57 31.0 3.58e-01 88.2% 74.5%
2dqlA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 46.0 4.03e-01 98.7% 63.5%
5dymA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 45.0 4.22e-01 97.4% 76.0%
2x8xX01 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.52 40.0 4.09e-01 92.1% 86.8%
3pxpA02 3.30.450.180 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.52 43.0 3.30e-01 96.1% 84.4%
2bgcA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 34.0 3.13e-01 100.0% 49.5%
4ozjA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 36.0 3.28e-01 100.0% 53.8%
3e0jB00 3.90.1030.20 Alpha Beta › Alpha-Beta Complex › 50s Ribosomal Protein L17; Chain: A, › DNA polymerase delta, p66 (Cdc27) subunit, wHTH domain 0.51 40.0 3.34e-01 88.2% 59.4%
1vwxT01 2.30.30.70 Mainly Beta › Roll › SH3 type barrels. › Ribosomal protein L21 0.51 34.0 3.11e-01 88.2% 53.6%
2yxdA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 39.0 3.10e-01 88.2% 87.7%
5cm2Z00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.50 40.0 3.01e-01 86.8% 74.5%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3588288 101.1.9.32 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › ANT 0.80 72.0 5.75e-01 100.0% 52.7%
4033072 101.1.9.32 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › ANT 0.79 71.0 6.91e-01 100.0% 92.9%
3941757 101.1.9.32 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › ANT 0.77 68.0 5.71e-01 100.0% 60.8%
3986225 101.1.9.32 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › ANT 0.76 67.0 4.92e-01 100.0% 38.5%
3232782 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.74 50.0 5.18e-01 100.0% 75.7%
5075144 101.1.9.16 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.73 55.0 5.58e-01 100.0% 81.3%
4009252 3371.1.1.2 ↗ few secondary structure elements › Regulator of transcription protein Rtr1 › Regulator of transcription protein Rtr1 › Regulator of transcription protein Rtr1 › PF27493 0.69 35.0 4.25e-01 85.5% 76.0%
3978692 101.1.9.143 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › Virulence_RhuM 0.63 51.0 4.12e-01 100.0% 45.3%
5049862 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.61 37.0 2.89e-01 88.2% 26.3%
4966558 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.61 48.0 4.67e-01 100.0% 76.5%
5051696 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.60 32.0 3.57e-01 86.8% 65.5%
4988082 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.58 42.0 4.39e-01 90.8% 84.3%
3730463 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.56 50.0 4.21e-01 100.0% 74.6%
4238490 812.2.1.1 ↗ a+b duplicates or obligate multimers › MinE-like › Cyanase C-terminal domain › Cyanase C-terminal domain › Cyanate_lyase 0.56 34.0 3.67e-01 97.4% 70.8%
4352407 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.56 42.0 4.45e-01 88.2% 85.7%
5066425 304.5.1.7 ↗ a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 0.55 37.0 3.67e-01 100.0% 66.3%
5003912 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.54 46.0 3.69e-01 97.4% 67.5%
4277614 242.1.1.5 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › WhiA_N 0.54 44.0 3.97e-01 98.7% 63.6%
4413471 304.5.1.7 ↗ a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 0.52 33.0 3.40e-01 100.0% 65.3%
None — 0.52 42.0 2.77e-01 96.1% 19.2%
4029392 375.1.1.179 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.51 40.0 3.09e-01 88.2% 35.7%
4982424 2003.1.5.81 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.51 42.0 2.96e-01 90.8% 66.9%
3220485 5001.1.1.0 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.51 38.0 2.55e-01 82.9% 72.8%
4997255 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 43.0 4.00e-01 97.4% 77.0%