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IMGVR_UViG_3300010351_000965-3300010351-Ga0116248_1000502924
Arc-VirIMGVR_UViG_3300010351_000965-3300010351-Ga0116248_1000502924
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 18-126
Domain cluster:
rep: Ig8144_scaffold_2_curated_closed_complete_start-adj_prodigal-single.1__X__X__00930__D73-158
CATH (33)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2nrqA00 | 3.30.1440.10 | Alpha Beta › 2-Layer Sandwich › 50s Ribosomal Protein L5; Chain: A, › Ribosomal protein L5 | 0.75 | 39.0 | 3.63e-01 | 89.9% | 40.1% |
| 3uebF00 | 3.30.300.100 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › MTH677-like | 0.65 | 40.0 | 4.23e-01 | 87.2% | 67.0% |
| 6wubf01 | 3.30.70.60 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B | 0.65 | 39.0 | 4.14e-01 | 89.0% | 68.1% |
| 4xaeB00 | 2.60.120.330 | Mainly Beta › Sandwich › Jelly Rolls › B-lactam Antibiotic, Isopenicillin N Synthase; Chain | 0.63 | 46.0 | 3.34e-01 | 77.1% | 63.3% |
| 4fprB00 | 3.30.70.2910 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.63 | 43.0 | 4.11e-01 | 92.7% | 60.2% |
| 3cueB00 | 3.30.1380.20 | Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › Trafficking protein particle complex subunit 3 | 0.62 | 50.0 | 4.33e-01 | 86.2% | 58.1% |
| 2y8yA01 | 3.30.70.1200 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Crispr-associated protein; domain 1 | 0.62 | 36.0 | 3.99e-01 | 89.0% | 72.1% |
| 3qkbA00 | 3.30.110.70 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Hypothetical protein apc22750. Chain B | 0.61 | 42.0 | 4.49e-01 | 98.2% | 84.0% |
| 1bdfA01 | 3.30.1360.10 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit | 0.60 | 39.0 | 3.94e-01 | 71.6% | 66.0% |
| 3bfmA01 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.60 | 41.0 | 3.55e-01 | 71.6% | 59.2% |
| 2od6C00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.59 | 46.0 | 4.71e-01 | 84.4% | 89.7% |
| 2m05A00 | 3.30.1490.140 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Amyloidogenic glycoprotein, copper-binding domain | 0.59 | 35.0 | 4.27e-01 | 88.1% | 100.0% |
| 3ce8A00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 40.0 | 4.40e-01 | 85.3% | 87.6% |
| 1av5A00 | 3.30.428.10 | Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › HIT-like | 0.58 | 41.0 | 4.11e-01 | 73.4% | 79.6% |
| 2bbeA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 43.0 | 4.39e-01 | 82.6% | 84.5% |
| 1ug8A00 | 3.30.1370.50 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › R3H-like domain | 0.57 | 34.0 | 3.77e-01 | 77.1% | 74.7% |
| 3c0wA01 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.56 | 45.0 | 4.40e-01 | 98.2% | 80.0% |
| 2ab5B01 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.55 | 38.0 | 3.68e-01 | 89.0% | 61.7% |
| 3o4oB03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 36.0 | 3.65e-01 | 72.5% | 66.1% |
| 2joqA01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.55 | 34.0 | 3.91e-01 | 70.6% | 89.3% |
| 2yweA03 | 3.30.70.870 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 | 0.55 | 34.0 | 3.81e-01 | 74.3% | 81.7% |
| 4djbA00 | 3.30.70.2870 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Mastadenovirus E4 ORF3 | 0.54 | 45.0 | 4.46e-01 | 91.7% | 89.8% |
| 4q7aC02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 37.0 | 3.75e-01 | 89.0% | 71.3% |
| 1lqlA02 | 3.30.300.20 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain | 0.53 | 39.0 | 4.01e-01 | 76.1% | 98.1% |
| 3u83A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 32.0 | 3.37e-01 | 71.6% | 64.4% |
| 3b8pA00 | 3.30.1890.10 | Alpha Beta › 2-Layer Sandwich › Bacterial polysaccharide co-polymerase-like › FepE-like | 0.53 | 44.0 | 3.60e-01 | 91.7% | 92.8% |
| 6w5yC01 | 3.90.310.10 | Alpha Beta › Alpha-Beta Complex › Viral Glycoprotein Gp70 › ENV polyprotein, receptor-binding domain | 0.53 | 37.0 | 3.40e-01 | 72.5% | 76.4% |
| 6y1zA01 | 2.70.170.10 | Mainly Beta › Distorted Sandwich › Acetylcholine Binding Protein; Chain: A, › Neurotransmitter-gated ion-channel ligand-binding domain | 0.52 | 41.0 | 3.33e-01 | 85.3% | 80.2% |
| 2jdcA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.52 | 37.0 | 3.38e-01 | 74.3% | 76.6% |
| 3bb5A00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 39.0 | 4.01e-01 | 81.7% | 90.3% |
| 1vdhA01 | 3.30.70.1030 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Apc35880; domain 1 | 0.51 | 40.0 | 3.88e-01 | 83.5% | 81.0% |
| 4czwA01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.51 | 43.0 | 3.01e-01 | 95.4% | 58.2% |
| 1repC02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 36.0 | 3.88e-01 | 76.1% | 89.0% |
ECOD (47)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4976040 | 882.1.1.4 ↗ | a+b two layers › Ribosomal protein L5 › Ribosomal protein L5 › Ribosomal protein L5 › RNA_binding | 0.71 | 39.0 | 3.49e-01 | 89.9% | 37.9% |
| 4998285 | 882.1.1.4 ↗ | a+b two layers › Ribosomal protein L5 › Ribosomal protein L5 › Ribosomal protein L5 › RNA_binding | 0.69 | 38.0 | 3.40e-01 | 89.9% | 38.7% |
| 4934117 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.67 | 42.0 | 4.68e-01 | 75.2% | 81.2% |
| 5045742 | 882.1.1.4 ↗ | a+b two layers › Ribosomal protein L5 › Ribosomal protein L5 › Ribosomal protein L5 › RNA_binding | 0.66 | 37.0 | 3.29e-01 | 89.9% | 38.7% |
| 4943808 | 882.1.1.4 ↗ | a+b two layers › Ribosomal protein L5 › Ribosomal protein L5 › Ribosomal protein L5 › RNA_binding | 0.66 | 37.0 | 3.30e-01 | 89.9% | 38.7% |
| 4064719 | 242.1.1.5 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › WhiA_N | 0.66 | 42.0 | 4.28e-01 | 77.1% | 66.7% |
| 3205148 | 873.1.1.4 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › TRAPP | 0.64 | 51.0 | 4.21e-01 | 86.2% | 51.5% |
| 3609959 | 873.1.1.4 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › TRAPP | 0.64 | 52.0 | 4.49e-01 | 87.2% | 58.2% |
| 5023895 | 882.1.1.4 ↗ | a+b two layers › Ribosomal protein L5 › Ribosomal protein L5 › Ribosomal protein L5 › RNA_binding | 0.64 | 35.0 | 3.19e-01 | 89.9% | 39.3% |
| 1124197 | 304.141.1.1 ↗ | a+b two layers › Alpha-beta plaits › Avirulence Effector AvrLm4-7 › Avirulence Effector AvrLm4-7 › AvrLm4-7 | 0.63 | 44.0 | 4.16e-01 | 95.4% | 60.8% |
| 4026602 | 873.1.1.4 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › TRAPP | 0.63 | 50.0 | 4.29e-01 | 86.2% | 57.1% |
| 4442872 | 306.7.1.1 ↗ | a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N | 0.62 | 44.0 | 4.33e-01 | 72.5% | 95.7% |
| 4024812 | 304.114.1.0 ↗ | a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain | 0.61 | 42.0 | 4.35e-01 | 90.8% | 74.3% |
| 4971745 | 873.1.1.0 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain | 0.61 | 48.0 | 4.58e-01 | 85.3% | 75.0% |
| 4628544 | 306.7.1.1 ↗ | a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N | 0.61 | 42.0 | 4.21e-01 | 72.5% | 95.7% |
| 180088 | 872.3.1.0 ↗ | a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like | 0.61 | 42.0 | 4.54e-01 | 98.2% | 86.8% |
| 3964912 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.60 | 37.0 | 4.43e-01 | 81.7% | 91.9% |
| 3822140 | 387.1.5.7 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › Scorpion toxin-like › SCRL | 0.60 | 36.0 | 4.40e-01 | 96.3% | 94.3% |
| 4233442 | 304.4.1.54 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › Amnionless | 0.58 | 39.0 | 3.80e-01 | 89.9% | 62.5% |
| 3196489 | 328.7.1.1 ↗ | a+b two layers › IF3-like › Smr domain › Smr domain › Smr | 0.58 | 36.0 | 3.62e-01 | 76.1% | 61.8% |
| 4140824 | 304.4.1.3 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › YCII | 0.57 | 43.0 | 4.40e-01 | 78.9% | 86.5% |
| 5012937 | 304.116.1.6 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in release factor › Ferredoxin-like domain in release factor › acVLRF1 | 0.57 | 39.0 | 4.11e-01 | 84.4% | 80.0% |
| 5074227 | 873.1.1.20 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › DUF6125 | 0.57 | 45.0 | 4.09e-01 | 89.0% | 61.7% |
| 5026139 | 304.25.1.1 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer | 0.57 | 41.0 | 4.13e-01 | 75.2% | 91.8% |
| 5023875 | 304.116.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in release factor › Ferredoxin-like domain in release factor | 0.56 | 38.0 | 4.03e-01 | 94.5% | 80.0% |
| 3720957 | 304.4.1.3 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › YCII | 0.56 | 42.0 | 4.28e-01 | 78.9% | 86.7% |
| 3823835 | 304.4.1.78 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › DUF7036 | 0.56 | 39.0 | 3.98e-01 | 72.5% | 92.4% |
| 3214500 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.55 | 35.0 | 4.00e-01 | 77.1% | 87.5% |
| 286927 | 242.1.1.1 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 | 0.55 | 38.0 | 3.63e-01 | 89.0% | 59.0% |
| 3211626 | 304.162.1.2 ↗ | a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain › FLAD1_M | 0.54 | 35.0 | 3.86e-01 | 71.6% | 82.4% |
| 5049353 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.54 | 39.0 | 3.79e-01 | 82.6% | 66.4% |
| 3355857 | 4955.1.1.0 ↗ | a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit | 0.54 | 38.0 | 3.69e-01 | 71.6% | 74.2% |
| 3226314 | 273.1.1.1 ↗ | a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP | 0.54 | 38.0 | 3.21e-01 | 73.4% | 47.6% |
| 5012702 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.54 | 35.0 | 3.46e-01 | 75.2% | 61.7% |
| 4948091 | 304.116.1.5 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in release factor › Ferredoxin-like domain in release factor › DUF460 | 0.54 | 38.0 | 3.95e-01 | 89.9% | 81.0% |
| 5008586 | 304.116.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in release factor › Ferredoxin-like domain in release factor | 0.53 | 36.0 | 3.79e-01 | 85.3% | 78.9% |
| 3753559 | 304.47.1.1 ↗ | a+b two layers › Alpha-beta plaits › SEA domain › SEA domain › SEA | 0.53 | 41.0 | 4.02e-01 | 84.4% | 90.4% |
| 3593847 | 315.1.1.0 ↗ | a+b two layers › Tautomerase/MIF-like › Tautomerase/MIF › Tautomerase/MIF | 0.53 | 42.0 | 4.31e-01 | 87.2% | 100.0% |
| 3599012 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.53 | 42.0 | 4.30e-01 | 92.7% | 89.5% |
| 4990439 | 304.116.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in release factor › Ferredoxin-like domain in release factor | 0.52 | 38.0 | 3.97e-01 | 89.0% | 84.0% |
| 4997962 | 304.139.1.2 ↗ | a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7/Csa2-related › RAMPs | 0.51 | 39.0 | 3.04e-01 | 83.5% | 92.7% |
| 5043656 | 304.116.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in release factor › Ferredoxin-like domain in release factor | 0.51 | 37.0 | 3.99e-01 | 80.7% | 89.5% |
| None | — | 0.51 | 44.0 | 3.53e-01 | 95.4% | 49.1% | |
| 2845596 | 304.61.1.1 ↗ | a+b two layers › Alpha-beta plaits › Aldoxime dehydratase › Aldoxime dehydratase › Dehydratase_hem | 0.50 | 43.0 | 3.46e-01 | 94.5% | 48.9% |
| 5068142 | 2004.1.3.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III › POR | 0.50 | 35.0 | 2.87e-01 | 71.6% | 90.2% |
| 3036035 | 101.1.2.187 ↗ | alpha arrays › HTH › HTH › winged helix domain › Rep3_C | 0.50 | 38.0 | 3.86e-01 | 80.7% | 91.4% |
| 3960213 | 304.156.1.5 ↗ | a+b two layers › Alpha-beta plaits › DNA translocase FtsK N-terminal domain › DNA translocase FtsK N-terminal domain › PF31086 | 0.50 | 45.0 | 4.48e-01 | 100.0% | 94.8% |
D2
medium
residues 133-166
Domain cluster:
representative