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IMGVR_UViG_3300010351_001513-3300010351-Ga0116248_100112358

Arc-Vir

IMGVR_UViG_3300010351_001513-3300010351-Ga0116248_100112358

Identity

Kingdom:
archaea

Quality

76.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 27-116
PDB
Domain cluster: representative
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3nqzA01 3.10.450.490 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 45.0 4.51e-01 78.9% 76.9%
3u4vA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 41.0 3.76e-01 72.2% 72.4%
6vilA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.58 44.0 3.76e-01 100.0% 50.3%
5b3pA00 3.30.460.80 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › NADH:ubiquinone oxidoreductase Nqo5 subunit 0.57 47.0 4.19e-01 91.1% 75.4%
1v1pB02 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.57 39.0 4.19e-01 71.1% 95.9%
1cboA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.56 40.0 2.76e-01 75.6% 68.1%
5egwA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.56 45.0 3.05e-01 100.0% 22.3%
4bb7B00 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.54 41.0 3.07e-01 100.0% 31.6%
7cceA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.53 42.0 3.53e-01 100.0% 50.3%
7f13A01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 45.0 3.84e-01 92.2% 72.9%
3dxoB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 43.0 3.99e-01 90.0% 85.5%
3k7cA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 43.0 4.13e-01 92.2% 94.4%
5t4mB01 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.52 37.0 3.52e-01 75.6% 96.5%
3cu3A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 43.0 3.62e-01 92.2% 69.1%
1vqqA01 3.10.450.100 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › NTF2-like; domain 1 0.52 43.0 4.09e-01 91.1% 87.2%
1lyvA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.52 36.0 2.63e-01 74.4% 33.2%
2xklA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 45.0 3.79e-01 100.0% 58.4%
3d2lA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.51 29.0 3.38e-01 90.0% 81.0%
1wznA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.50 29.0 3.46e-01 90.0% 89.3%
4xmeA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.50 43.0 3.46e-01 96.7% 87.0%
ECOD (36)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3302166 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.72 45.0 5.19e-01 100.0% 87.7%
3907176 4.1.1.248 ↗ beta barrels › SH3 › SH3 › SH3 › CABIT 0.69 47.0 4.80e-01 100.0% 71.1%
3824699 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.67 42.0 4.84e-01 100.0% 87.7%
3607981 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 41.0 4.46e-01 100.0% 78.4%
3999482 4.1.1.311 ↗ beta barrels › SH3 › SH3 › SH3 › BRWD_AD 0.64 57.0 5.32e-01 100.0% 79.1%
4180235 243.3.1.5 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › FTP 0.63 41.0 4.33e-01 90.0% 75.0%
3931053 4.25.1.2 ↗ beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain › BRWD_AD 0.63 57.0 5.55e-01 100.0% 91.0%
3591211 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 44.0 4.62e-01 100.0% 82.5%
3415831 4.25.1.2 ↗ beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain › BRWD_AD 0.62 57.0 5.13e-01 100.0% 77.5%
4150902 243.3.1.5 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › FTP 0.61 41.0 4.44e-01 90.0% 82.7%
4932514 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.61 47.0 4.25e-01 100.0% 60.8%
146271 243.3.1.5 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › FTP 0.61 45.0 4.49e-01 78.9% 75.8%
4545038 243.3.1.5 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › FTP 0.61 42.0 4.47e-01 90.0% 82.5%
4987019 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.59 38.0 4.15e-01 92.2% 80.0%
3836457 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.58 45.0 3.78e-01 100.0% 50.0%
3670066 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.57 44.0 3.70e-01 100.0% 47.7%
4524604 4272.1.1.1 ↗ a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa 0.57 48.0 3.99e-01 91.1% 57.4%
3617140 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.56 46.0 3.17e-01 100.0% 25.8%
4479020 243.3.1.5 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › FTP 0.56 39.0 4.04e-01 78.9% 76.5%
3970847 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 40.0 4.48e-01 91.1% 95.7%
4980001 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.55 45.0 4.17e-01 90.0% 87.8%
4681738 4272.1.1.1 ↗ a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa 0.54 44.0 3.70e-01 91.1% 58.8%
3802971 708.1.1.1 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › NAM 0.54 40.0 3.45e-01 78.9% 91.3%
4107647 243.18.1.1 ↗ a+b two layers › Cystatin-like › Maltokinase N-terminal domain › Maltokinase N-terminal domain › Mak_N_cap 0.54 42.0 4.19e-01 98.9% 80.0%
3855748 316.1.1.24 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › DNA_pol_B_thumb,DNA_pol_B_palm 0.54 42.0 3.22e-01 83.3% 47.8%
3285634 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.54 39.0 3.92e-01 86.7% 76.7%
3995290 4.1.1.332 ↗ beta barrels › SH3 › SH3 › SH3 › Peptidase_C1 0.53 45.0 4.27e-01 100.0% 80.0%
4878713 331.3.1.42 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Mtb12_C 0.53 45.0 4.37e-01 95.6% 95.0%
5044451 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.53 37.0 3.89e-01 90.0% 81.2%
3966794 243.3.1.5 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › FTP 0.53 39.0 3.91e-01 77.8% 77.8%
4978367 4111.1.1.2 ↗ a+b two layers › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › PCC 0.52 42.0 3.66e-01 100.0% 57.3%
3413155 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.51 35.0 3.73e-01 70.0% 88.0%
4507316 220.1.1.20 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_TFIIH 0.51 43.0 4.00e-01 95.6% 73.9%
3514681 7089.1.1.0 ↗ a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD 0.50 32.0 3.71e-01 97.8% 98.3%
3193911 389.1.3.0 ↗ few secondary structure elements › EGF-like › EGF-related › TNF receptor-like 0.50 39.0 4.04e-01 92.2% 91.8%
3930190 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 37.0 3.41e-01 78.9% 93.3%