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IMGVR_UViG_3300010353_000095-3300010353-Ga0116236_100379242

Arc-Vir

IMGVR_UViG_3300010353_000095-3300010353-Ga0116236_100379242

Identity

Kingdom:
archaea

Quality

82.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-57
PDB
Domain cluster: representative
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2hjqA01 3.40.5.20 Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › YqbF domain 0.79 60.0 6.30e-01 100.0% 93.5%
1bdyA00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.62 52.0 4.05e-01 100.0% 92.7%
4id8A00 3.30.70.20 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 51.0 4.79e-01 100.0% 96.9%
5i0fB04 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.59 41.0 3.59e-01 92.2% 46.4%
4dguA02 2.60.40.2670 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 47.0 3.84e-01 96.1% 96.2%
2hoxA03 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.57 42.0 3.41e-01 86.3% 84.1%
2y8yA02 3.30.70.1210 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Crispr-associated protein; domain 2 0.56 45.0 3.66e-01 100.0% 93.0%
4k4kA02 2.60.40.2630 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 44.0 3.53e-01 100.0% 97.7%
3h5aD01 3.90.930.70 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.56 47.0 4.06e-01 100.0% 92.0%
4ba0A03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.54 38.0 3.86e-01 92.2% 78.4%
2f2hA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.54 37.0 3.78e-01 92.2% 81.2%
3cjxA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.54 45.0 3.31e-01 100.0% 34.0%
4obmA00 3.40.630.190 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › LCP protein 0.53 45.0 2.94e-01 100.0% 23.6%
1vj2A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.52 42.0 3.41e-01 100.0% 43.9%
4oifA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.51 33.0 3.21e-01 92.2% 54.8%
5axmB00 3.30.70.3000 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › tRNA(His) guanylyltransferase (Thg1) 0.51 41.0 2.82e-01 100.0% 42.3%
ECOD (33)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5078669 4076.3.1.0 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.82 73.0 6.95e-01 100.0% 93.2%
4956454 4076.3.1.0 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.78 59.0 5.82e-01 100.0% 78.2%
3691283 4076.3.1.9 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › PSF1_C 0.76 61.0 6.14e-01 100.0% 92.0%
4932061 4076.4.1.0 ↗ a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain 0.74 57.0 5.97e-01 98.0% 97.8%
4981952 4076.3.1.0 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.74 58.0 5.84e-01 100.0% 90.0%
5033467 4076.3.1.0 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.73 56.0 5.77e-01 100.0% 95.8%
5024995 4076.3.1.0 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.71 55.0 5.53e-01 100.0% 86.8%
5083883 4076.3.1.0 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.70 52.0 5.43e-01 100.0% 93.3%
4983058 4076.3.1.5 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › Gins51_C 0.69 56.0 5.47e-01 100.0% 84.5%
4944185 4076.3.1.0 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.68 53.0 5.03e-01 100.0% 70.8%
4230268 4076.4.1.0 ↗ a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain 0.67 51.0 5.34e-01 96.1% 97.8%
4269273 4076.4.1.1 ↗ a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain › PriS_C 0.66 50.0 5.24e-01 96.1% 97.8%
4031645 4076.3.1.0 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.62 50.0 5.03e-01 100.0% 96.0%
1175501 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.61 54.0 4.23e-01 100.0% 75.0%
3611853 2484.1.1.1 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 0.58 45.0 2.97e-01 88.2% 69.6%
4972491 101.21.1.1 ↗ alpha arrays › HTH › HTH domain in DNA topoisomerase IV alpha subunit › HTH domain in DNA topoisomerase IV alpha subunit › TP6A_N 0.57 42.0 3.33e-01 88.2% 97.7%
4048263 101.21.1.1 ↗ alpha arrays › HTH › HTH domain in DNA topoisomerase IV alpha subunit › HTH domain in DNA topoisomerase IV alpha subunit › TP6A_N 0.56 43.0 3.33e-01 90.2% 97.8%
3348024 109.4.1.583 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DNA_pol_phi 0.56 45.0 3.39e-01 100.0% 58.0%
5046333 101.21.1.1 ↗ alpha arrays › HTH › HTH domain in DNA topoisomerase IV alpha subunit › HTH domain in DNA topoisomerase IV alpha subunit › TP6A_N 0.56 41.0 3.27e-01 88.2% 99.2%
4797685 304.126.1.1 ↗ a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C › V_ATPase_I 0.54 41.0 3.43e-01 96.1% 64.6%
4263982 375.1.1.302 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › MRNIP 0.54 37.0 3.63e-01 100.0% 67.3%
3714384 7.1.1.15 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain › DUF7759 0.54 40.0 3.27e-01 86.3% 43.2%
3445801 376.1.2.2 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_2 0.54 35.0 3.42e-01 78.4% 58.3%
4969104 304.12.1.0 ↗ a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 0.53 42.0 3.77e-01 100.0% 92.9%
4977846 101.21.1.1 ↗ alpha arrays › HTH › HTH domain in DNA topoisomerase IV alpha subunit › HTH domain in DNA topoisomerase IV alpha subunit › TP6A_N 0.53 39.0 3.10e-01 88.2% 98.5%
3624531 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.53 36.0 3.74e-01 94.1% 84.4%
3234851 11.1.5.6 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › T-box 0.52 38.0 2.68e-01 80.4% 94.1%
3721162 10.12.1.49 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_7 0.52 41.0 3.29e-01 100.0% 40.0%
4998482 101.21.1.1 ↗ alpha arrays › HTH › HTH domain in DNA topoisomerase IV alpha subunit › HTH domain in DNA topoisomerase IV alpha subunit › TP6A_N 0.52 41.0 3.18e-01 94.1% 89.6%
3189679 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.52 40.0 3.18e-01 100.0% 36.9%
3441614 2003.1.5.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.52 35.0 2.51e-01 72.5% 44.3%
3597664 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.52 32.0 3.36e-01 94.1% 68.9%
4946992 873.1.1.1 ↗ a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › V4R 0.51 37.0 2.73e-01 86.3% 51.4%
D2 high residues 68-132
PDB
Domain cluster: rep: IMGVR_UViG_3300014934_000039-3300014934-Ga0169773_1009334__D1-60