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IMGVR_UViG_3300010353_001235-3300010353-Ga0116236_1000691516

Arc-Vir

IMGVR_UViG_3300010353_001235-3300010353-Ga0116236_1000691516

Identity

Kingdom:
archaea

Quality

85.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 71-155
PDB
Domain cluster: rep: IMGVR_UViG_3300029775_000005-3300029775-Ga0134843_100058416__D45-112
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3eaaA00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.54 45.0 3.72e-01 92.9% 93.8%
5bw0F00 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.54 36.0 3.59e-01 85.9% 63.7%
1flmA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 42.0 3.75e-01 85.9% 92.6%
3d4eA02 3.30.1450.10 Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › 0.53 34.0 3.57e-01 90.6% 71.8%
3e99A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 43.0 3.63e-01 96.5% 93.2%
ECOD (10)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3222110 2484.1.1.162 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › F-box 0.68 49.0 3.96e-01 92.9% 41.3%
3487868 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.64 45.0 5.02e-01 96.5% 95.4%
4581407 222.1.1.0 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase 0.54 46.0 3.81e-01 92.9% 91.3%
4164014 7504.1.1.1 ↗ a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › Ham1p_like 0.53 43.0 3.37e-01 94.1% 76.1%
3282756 1.1.5.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.53 42.0 3.62e-01 87.1% 89.6%
3573681 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.52 44.0 4.01e-01 95.3% 98.3%
4953123 2004.1.1.198 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.52 43.0 2.80e-01 92.9% 34.1%
3600147 897.1.1.0 ↗ a+b two layers › Acidic mitochondrial matrix protein p32-like › Acidic mitochondrial matrix protein p32 › Acidic mitochondrial matrix protein p32 0.51 46.0 3.37e-01 100.0% 43.9%
3790800 5.1.4.12 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Sema 0.51 46.0 2.82e-01 100.0% 68.5%
3570911 4291.1.1.1 ↗ beta barrels › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol_BP 0.50 45.0 2.95e-01 100.0% 23.9%
D2 high residues 165-237
PDB
Domain cluster: representative
CATH (35)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4qa8A00 2.50.20.20 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › 0.62 52.0 3.74e-01 100.0% 31.9%
3d9rB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 55.0 4.55e-01 100.0% 94.7%
3f7xA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 53.0 4.46e-01 100.0% 93.2%
1txkB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 44.0 3.81e-01 75.3% 89.6%
4rt0A00 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.61 44.0 3.98e-01 79.5% 73.4%
1wnhA02 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 52.0 4.45e-01 98.6% 83.3%
3hk4A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 52.0 4.45e-01 98.6% 95.8%
3oyyA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.59 42.0 4.41e-01 90.4% 84.8%
3a5zB01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.59 41.0 4.39e-01 89.0% 87.3%
1jzdC00 2.60.40.1250 Mainly Beta › Sandwich › Immunoglobulin-like › Thiol:disulfide interchange protein DsbD, N-terminal domain 0.58 40.0 3.49e-01 72.6% 76.3%
6qm7A00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.57 47.0 3.34e-01 94.5% 41.4%
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.57 40.0 4.18e-01 91.8% 83.1%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.56 40.0 4.28e-01 90.4% 88.9%
3qf7A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.56 41.0 2.75e-01 76.7% 33.7%
4j8tA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 47.0 4.05e-01 98.6% 93.0%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.56 40.0 4.16e-01 87.7% 81.2%
3f83A03 2.60.40.2040 Mainly Beta › Sandwich › Immunoglobulin-like › CFA/I fimbrial subunit E, pilin domain 0.55 39.0 3.13e-01 75.3% 83.6%
3grdA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 46.0 3.96e-01 100.0% 92.4%
1a5yA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.55 44.0 2.95e-01 87.7% 37.3%
2ia7A00 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 43.0 3.77e-01 90.4% 56.8%
1mveA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.55 44.0 3.10e-01 90.4% 30.2%
4b28A02 3.90.230.10 Alpha Beta › Alpha-Beta Complex › Creatine Amidinohydrolase › Creatinase/methionine aminopeptidase superfamily 0.54 45.0 3.15e-01 91.8% 82.4%
6gp1A00 3.30.1300.40 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.54 32.0 3.39e-01 98.6% 64.6%
4by6B00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.54 38.0 2.97e-01 82.2% 33.1%
2krtA01 3.10.450.270 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 39.0 3.61e-01 82.2% 68.0%
4blqA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 41.0 2.83e-01 84.9% 62.5%
4apxB01 2.60.40.3430 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 37.0 3.19e-01 72.6% 68.3%
2zwsA02 2.60.40.2300 Mainly Beta › Sandwich › Immunoglobulin-like › Neutral/alkaline non-lysosomal ceramidase, C-terminal domain 0.53 37.0 3.10e-01 74.0% 94.8%
3nqhA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.52 44.0 2.98e-01 98.6% 32.3%
7pkwA01 3.10.450.540 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 42.0 3.85e-01 94.5% 89.3%
3ub1D02 3.10.450.540 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 43.0 3.85e-01 98.6% 86.8%
2i1yA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.51 42.0 2.79e-01 89.0% 35.5%
3ig4A02 3.90.230.10 Alpha Beta › Alpha-Beta Complex › Creatine Amidinohydrolase › Creatinase/methionine aminopeptidase superfamily 0.51 42.0 2.92e-01 91.8% 80.6%
2xglA00 3.10.450.300 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › YebF/Colicin-M immunity protein 0.50 42.0 3.98e-01 97.3% 92.3%
1aocA00 2.10.90.10 Mainly Beta › Ribbon › Cystine Knot Cytokines, subunit B › Cystine-knot cytokines 0.50 38.0 3.02e-01 86.3% 45.7%
ECOD (27)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5067458 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 45.0 5.06e-01 78.1% 100.0%
4146937 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.61 44.0 4.63e-01 90.4% 86.2%
3276882 206.1.1.7 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PI3_PI4_kinase 0.60 52.0 3.30e-01 98.6% 37.9%
135165 243.1.1.36 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_5 0.60 52.0 4.46e-01 98.6% 96.6%
4201878 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.59 43.0 4.51e-01 90.4% 86.2%
4041586 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.59 43.0 4.51e-01 89.0% 86.2%
3965134 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.58 41.0 3.66e-01 93.2% 49.6%
1592 11.1.1.142 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DsbD_N 0.57 39.0 3.42e-01 72.6% 73.6%
3926803 5.1.4.15 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RPE65 0.57 49.0 2.96e-01 100.0% 35.1%
3732486 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 38.0 3.62e-01 71.2% 78.9%
4289288 330.6.1.1 ↗ a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer 0.56 43.0 3.62e-01 84.9% 53.1%
3948467 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.55 41.0 4.30e-01 90.4% 89.2%
3427427 243.3.1.47 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF7074 0.55 47.0 4.41e-01 97.3% 96.7%
4945114 4252.1.1.10 ↗ beta barrels › AttH-like › AttH-like › AttH-like › DUF2804 0.54 42.0 3.18e-01 89.0% 90.5%
1032394 3480.1.1.1 ↗ a+b duplicates or obligate multimers › Lipoprotein-associated type-17-domain › Lipoprotein-associated type-17-domain › Lipoprotein-associated type-17-domain › Lipoprotein_17 0.54 43.0 3.74e-01 89.0% 61.5%
3510465 11.1.1.628 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Sarcoglycan_2 0.54 37.0 3.54e-01 71.2% 90.6%
3260045 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.53 34.0 3.45e-01 80.8% 64.0%
3700394 319.1.1.3 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CS 0.53 40.0 3.42e-01 79.5% 74.8%
3435224 243.3.1.19 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF3615 0.52 39.0 4.10e-01 80.8% 98.5%
3270561 2007.2.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.52 42.0 2.78e-01 87.7% 34.1%
184742 3480.1.1.1 ↗ a+b duplicates or obligate multimers › Lipoprotein-associated type-17-domain › Lipoprotein-associated type-17-domain › Lipoprotein-associated type-17-domain › Lipoprotein_17 0.52 41.0 3.53e-01 89.0% 59.5%
4425733 7504.1.1.1 ↗ a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › Ham1p_like 0.51 41.0 3.02e-01 87.7% 90.0%
5018718 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.51 39.0 4.13e-01 86.3% 96.9%
3547472 243.3.1.4 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Latexin_N 0.51 42.0 3.86e-01 97.3% 91.4%
3822745 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.50 43.0 3.70e-01 100.0% 66.4%
169663 9.1.1.11 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin_2 0.50 42.0 3.36e-01 95.9% 45.2%
3924984 2007.2.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.50 41.0 2.74e-01 89.0% 34.4%
D3 high residues 243-368
PDB
Domain cluster: rep: MF668280.1__ASZ74684.1__SEA_PHABBA_115__00109__D718-840