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IMGVR_UViG_3300010353_001907-3300010353-Ga0116236_100266721
Arc-VirIMGVR_UViG_3300010353_001907-3300010353-Ga0116236_100266721
Identity
- Kingdom:
- archaea
Quality
83.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 5-66
Domain cluster:
representative
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2vpaA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.58 | 47.0 | 3.34e-01 | 91.9% | 68.1% |
| 4wjmA00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.56 | 46.0 | 2.93e-01 | 91.9% | 51.6% |
| 2hgsA02 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.53 | 42.0 | 3.56e-01 | 90.3% | 82.9% |
| 1m0wA02 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.51 | 40.0 | 3.45e-01 | 88.7% | 82.4% |
| 3ljsA00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.51 | 41.0 | 2.67e-01 | 91.9% | 54.3% |
| 1novA00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.50 | 37.0 | 2.45e-01 | 82.3% | 53.4% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3596330 | 1.1.7.50 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › EF-G_D2 | 0.62 | 49.0 | 3.97e-01 | 90.3% | 88.5% |
| 3701337 | 1.1.7.19 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 | 0.61 | 51.0 | 4.06e-01 | 96.8% | 82.2% |
| 4944096 | 304.51.1.1 ↗ | a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › Cas_Cas6_C | 0.57 | 40.0 | 3.22e-01 | 72.6% | 85.5% |
| 3795553 | 389.1.2.0 ↗ | few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain | 0.56 | 38.0 | 3.44e-01 | 72.6% | 67.7% |
| 2320777 | 206.1.3.14 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › GSH_synth_ATP | 0.55 | 45.0 | 3.30e-01 | 91.9% | 32.2% |
| 3316686 | 2484.1.1.157 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF4371 | 0.53 | 42.0 | 2.95e-01 | 93.5% | 37.1% |
| 5025910 | 80.1.1.0 ↗ | beta complex topology › HesB-like domain › HesB-like domain › HesB-like domain | 0.53 | 36.0 | 3.25e-01 | 72.6% | 58.9% |
| 3273083 | 11.1.5.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f | 0.52 | 36.0 | 3.17e-01 | 71.0% | 68.4% |
| 3454981 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.51 | 32.0 | 3.03e-01 | 80.6% | 48.8% |
| 3211091 | 11.2.1.106 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › PF30324 | 0.50 | 40.0 | 3.05e-01 | 96.8% | 89.2% |
D2
medium
residues 71-105
Domain cluster:
rep: IMGVR_UViG_3300028640_000635-3300028640-Ga0302237_10091211__D3-32