←Back to structures

IMGVR_UViG_3300010353_002053-3300010353-Ga0116236_1003299617

Arc-Vir

IMGVR_UViG_3300010353_002053-3300010353-Ga0116236_1003299617

Identity

Kingdom:
archaea

Quality

74.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-51
PDB
D2 medium residues 52-153
PDB
Domain cluster: rep: ON970620.1__UVK63857.1__SEA_LILYPAD_53__00053__D3-100
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01844.30 best HNH 27.5 3.80e-06 56.9% 95.7%
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2qgpA00 1.10.30.50 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › 0.81 53.0 5.83e-01 95.1% 81.9%
1rfhA01 3.30.60.20 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.66 29.0 4.18e-01 72.5% 97.6%
3m7kA00 3.30.40.220 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › 0.65 55.0 4.90e-01 90.2% 69.7%
4uf0A03 2.10.110.20 Mainly Beta › Ribbon › Cysteine Rich Protein › 0.64 36.0 4.32e-01 79.4% 84.6%
1m08A00 3.90.540.10 Alpha Beta › Alpha-Beta Complex › Colicin E7 immunity protein; Chain B, fragment: Endonuclease domain › Colicin/pyocin, DNase domain 0.57 45.0 4.18e-01 93.1% 65.6%
2dloA00 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.54 34.0 3.72e-01 82.4% 79.0%
1a73A00 3.90.75.10 Alpha Beta › Alpha-Beta Complex › Homing Intron 3 (I-Ppo) Encoded Endonuclease; Chain A › Homing Intron 3 (I-ppo) Encoded Endonuclease; Chain A 0.53 47.0 3.99e-01 100.0% 59.9%
2xzmZ00 3.30.1230.20 Alpha Beta › 2-Layer Sandwich › Hypothetical Cytosolic Protein; Chain: A; › Ribosomal protein S21 0.50 36.0 3.67e-01 73.5% 78.4%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5016552 378.1.1.10 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_4 0.84 58.0 5.67e-01 86.3% 65.5%
3965880 378.1.1.2 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.82 62.0 6.61e-01 95.1% 89.9%
1144783 378.1.1.2 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.82 59.0 4.94e-01 89.2% 46.9%
4941657 377.1.1.88 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › HNH 0.81 56.0 6.48e-01 85.3% 97.3%
5070853 378.1.1.2 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.80 58.0 6.36e-01 90.2% 89.4%
4999440 378.1.1.27 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_5 0.79 56.0 6.09e-01 88.2% 87.1%
5019258 378.1.1.2 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.79 58.0 6.46e-01 90.2% 97.5%
3963404 377.1.1.88 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › HNH 0.78 60.0 6.20e-01 92.2% 85.3%
3307439 378.1.1.0 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.76 63.0 5.94e-01 90.2% 73.8%
2991844 378.1.1.10 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_4 0.76 56.0 5.51e-01 87.3% 71.6%
185780 378.1.1.2 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.75 53.0 5.45e-01 90.2% 76.3%
2485694 378.1.1.2 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.71 51.0 4.61e-01 88.2% 56.0%
3322141 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.69 32.0 3.27e-01 78.4% 43.3%
119462 378.1.1.0 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.65 55.0 4.87e-01 90.2% 69.7%
5004503 378.1.1.20 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › DUF1524 0.63 51.0 4.65e-01 89.2% 65.2%
1291965 378.1.1.16 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › DraIII 0.63 54.0 4.21e-01 91.2% 71.2%
4100162 378.1.1.36 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › PF29604 0.62 50.0 5.23e-01 95.1% 98.9%
3839081 378.1.1.20 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › DUF1524 0.61 52.0 4.65e-01 91.2% 68.6%
3905981 378.1.1.2 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.61 55.0 5.05e-01 97.1% 85.4%
5080395 378.1.1.2 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.60 51.0 4.87e-01 91.2% 91.3%
4448977 378.1.1.15 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › Col-Pyo_DNase 0.57 45.0 4.07e-01 91.2% 61.4%
4018018 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.55 39.0 3.96e-01 88.2% 72.8%
3589217 378.1.1.11 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › Endonuclea_NS_2 0.54 46.0 3.69e-01 91.2% 56.8%