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IMGVR_UViG_3300010353_002242-3300010353-Ga0116236_100323601

Arc-Vir

IMGVR_UViG_3300010353_002242-3300010353-Ga0116236_100323601

Quality

86.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-66
PDB
CATH (42)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2gaiA03 2.70.20.10 Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Topoisomerase I, domain 3 0.75 50.0 3.96e-01 70.3% 35.8%
3f6gA01 3.30.160.740 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.69 41.0 4.30e-01 87.5% 65.5%
8f5pE01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.63 51.0 3.14e-01 89.1% 30.4%
4kqdB00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.63 46.0 3.81e-01 90.6% 43.1%
1bf5A02 2.60.40.630 Mainly Beta › Sandwich › Immunoglobulin-like › STAT transcription factor, DNA-binding domain 0.63 45.0 3.51e-01 75.0% 74.8%
6yiiA01 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.62 42.0 2.93e-01 71.9% 81.2%
4gq1A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.62 46.0 2.91e-01 81.2% 23.1%
4r6uA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 43.0 3.86e-01 75.0% 59.1%
1b78A00 3.90.950.10 Alpha Beta › Alpha-Beta Complex › Maf protein › 0.60 47.0 3.49e-01 89.1% 88.6%
2cy5A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 45.0 3.65e-01 95.3% 41.9%
4kh9B02 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.59 41.0 3.47e-01 75.0% 64.6%
4p2iA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.58 48.0 3.99e-01 92.2% 77.8%
7pkwA01 3.10.450.540 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 41.0 3.47e-01 92.2% 45.6%
1y8cA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.58 36.0 3.75e-01 81.2% 66.7%
2xzhA00 2.130.10.110 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Clathrin heavy-chain terminal domain 0.58 53.0 3.24e-01 100.0% 20.7%
1bf5A04 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.58 46.0 3.96e-01 93.8% 75.2%
5l09B00 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.58 44.0 3.36e-01 85.9% 42.7%
6cc0A01 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.57 44.0 3.35e-01 87.5% 36.6%
1tzzB01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.57 43.0 3.62e-01 93.8% 46.2%
5l10B00 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.55 44.0 3.33e-01 90.6% 35.9%
1ah5A03 3.30.160.40 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain 0.55 39.0 3.61e-01 85.9% 57.0%
2hqlA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 41.0 3.76e-01 96.9% 58.2%
4gnxC03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 47.0 3.43e-01 96.9% 50.8%
4kc3B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 41.0 3.65e-01 81.2% 67.4%
1jz7A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 47.0 3.98e-01 100.0% 98.3%
2giaA00 2.30.31.40 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › 0.55 44.0 3.54e-01 98.4% 73.4%
1vkdA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.54 46.0 2.95e-01 95.3% 38.3%
4ghbA00 2.40.160.190 Mainly Beta › Beta Barrel › Porin › 0.54 36.0 2.46e-01 76.6% 17.3%
4d10F01 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.54 41.0 3.01e-01 82.8% 56.4%
3wasA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.54 45.0 2.87e-01 100.0% 67.4%
4l8hB00 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.54 40.0 3.44e-01 87.5% 45.5%
5hp6A01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.54 48.0 3.02e-01 100.0% 35.8%
2qkpD00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.53 38.0 3.08e-01 87.5% 37.3%
1l3aA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.53 43.0 3.32e-01 96.9% 78.3%
3kojB00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 40.0 3.64e-01 95.3% 60.0%
4c92C00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.52 41.0 3.89e-01 96.9% 72.2%
1cs6A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 36.0 3.13e-01 75.0% 65.7%
2k4vA00 3.30.160.370 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Domain of unknown function DUF5064 0.51 44.0 3.63e-01 100.0% 68.8%
1f21A00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.51 44.0 3.40e-01 100.0% 86.8%
8aasC01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.50 41.0 3.58e-01 92.2% 78.4%
1g6q102 2.70.160.11 Mainly Beta › Distorted Sandwich › Hnrnp arginine n-methyltransferase1 › Hnrnp arginine n-methyltransferase1 0.50 39.0 3.02e-01 93.8% 88.6%
3ecrB03 3.30.160.40 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain 0.50 38.0 3.38e-01 87.5% 61.8%
ECOD (61)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5066760 330.6.1.1 a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer 0.70 44.0 3.48e-01 87.5% 33.1%
3658408 4325.1.1.13 mixed a+b and a/b › YegP-like › YegP-like › YegP-like › DUF4371 0.69 59.0 5.59e-01 95.3% 93.3%
5029914 252.2.1.0 a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.68 50.0 5.29e-01 82.8% 90.9%
3248836 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.67 45.0 3.46e-01 89.1% 29.0%
4930368 223.1.1.14 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.65 44.0 3.72e-01 71.9% 40.9%
3937193 223.2.1.37 a+b three layers › Profilin-like › profilin-like › profilin-like › C9orf72-like 0.65 51.0 3.78e-01 87.5% 32.6%
3755943 223.2.1.37 a+b three layers › Profilin-like › profilin-like › profilin-like › C9orf72-like 0.64 50.0 3.67e-01 89.1% 30.8%
3879303 330.1.1.5 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DND1_DSRM 0.63 42.0 4.01e-01 92.2% 56.2%
5076766 896.1.1.0 a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related 0.63 55.0 4.95e-01 100.0% 77.8%
3697816 2008.1.1.99 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_12 0.63 53.0 3.90e-01 96.9% 34.2%
3272081 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.63 49.0 3.75e-01 90.6% 70.0%
4612956 2484.1.1.50 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Dimer_Tnp_hAT 0.63 54.0 3.44e-01 100.0% 23.4%
3200827 2008.1.1.143 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF7924 0.62 52.0 3.39e-01 95.3% 22.7%
3289254 220.1.1.82 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_6 0.62 44.0 3.91e-01 90.6% 51.6%
4026006 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.62 43.0 4.00e-01 89.1% 57.5%
3722420 2008.1.1.143 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF7924 0.62 53.0 3.97e-01 96.9% 40.0%
2637738 11.1.5.12 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › STAT_bind 0.61 44.0 3.20e-01 76.6% 52.7%
3393619 284.4.1.2 a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain › PF28923 0.61 44.0 4.81e-01 96.9% 100.0%
3923711 220.1.1.66 beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.60 49.0 3.71e-01 95.3% 34.9%
3603992 330.10.1.1 a+b two layers › dsRBD-like › Heterocyclase TruD C-terminal domain › Heterocyclase TruD C-terminal domain › YcaO 0.60 46.0 4.08e-01 89.1% 56.8%
2754696 5.1.5.3 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.60 45.0 3.01e-01 85.9% 48.7%
4994776 218.1.1.0 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like 0.60 50.0 4.38e-01 96.9% 62.1%
3783184 2484.1.1.212 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RT_RNaseH 0.60 50.0 4.02e-01 98.4% 55.7%
3819309 330.1.1.5 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DND1_DSRM 0.60 45.0 4.20e-01 89.1% 63.5%
4946320 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.60 47.0 3.76e-01 89.1% 42.2%
4937350 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.60 41.0 4.16e-01 89.1% 72.3%
3608102 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.59 41.0 3.99e-01 89.1% 65.7%
3924626 2484.1.1.4 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_H 0.59 48.0 4.47e-01 93.8% 85.9%
3724785 2484.1.1.41 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › AnmK 0.59 49.0 3.62e-01 98.4% 82.1%
3851439 5.1.4.612 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Med16_N, Med16_bridge, Med16_C 0.59 47.0 2.76e-01 92.2% 32.8%
3424085 5.1.3.118 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.58 48.0 3.12e-01 96.9% 97.1%
4408649 2484.1.1.41 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › AnmK 0.58 47.0 3.35e-01 95.3% 58.2%
4371680 2484.1.1.41 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › AnmK 0.58 47.0 3.43e-01 95.3% 63.2%
3959925 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.58 46.0 3.99e-01 89.1% 56.0%
4478632 224.1.1.2 a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Gelsolin 0.58 43.0 2.66e-01 79.7% 28.8%
1234289 283.1.1.1 a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase › Peptidase_M24 0.58 39.0 2.97e-01 70.3% 37.5%
4935307 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.58 38.0 3.57e-01 85.9% 53.8%
4955671 7089.1.1.0 a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD 0.57 44.0 4.21e-01 95.3% 71.2%
3605420 2484.1.1.26 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Piwi 0.57 49.0 3.35e-01 100.0% 84.8%
4383357 2484.1.1.67 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.57 49.0 3.88e-01 100.0% 90.7%
4191459 264.2.1.0 beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.55 44.0 3.63e-01 89.1% 47.5%
4336711 2484.1.1.41 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › AnmK 0.55 45.0 3.20e-01 96.9% 60.4%
4136826 7520.1.1.0 a/b three-layered sandwiches › CinA-like › CinA-like › CinA-like 0.55 45.0 3.54e-01 90.6% 54.3%
3619212 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.55 37.0 2.43e-01 70.3% 58.7%
1145825 5.1.2.7 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › Glyco_hydro_130 0.54 45.0 2.87e-01 100.0% 67.4%
4218309 224.1.1.2 a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Gelsolin 0.54 45.0 2.61e-01 92.2% 30.1%
4609498 330.4.1.1 a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.54 43.0 4.03e-01 87.5% 72.5%
4416182 241.15.1.3 a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain › SPC25 0.53 42.0 3.67e-01 90.6% 58.1%
3972133 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.52 40.0 2.81e-01 85.9% 33.3%
5000965 512.1.1.0 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) 0.52 39.0 3.49e-01 89.1% 55.6%
4977196 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.52 41.0 2.79e-01 87.5% 33.3%
5025232 246.1.1.1 a+b four layers › Carbon-nitrogen hydrolase-like › Carbon-nitrogen hydrolase › Carbon-nitrogen hydrolase › CN_hydrolase 0.52 42.0 3.05e-01 96.9% 57.1%
4016686 232.1.1.3 a+b duplicates or obligate multimers › Pentein › Pentein › Pentein › PAD 0.52 42.0 2.69e-01 100.0% 45.8%
5079500 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.52 38.0 2.86e-01 81.2% 45.0%
5043517 2484.1.1.43 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Endonuclease_5 0.51 42.0 3.17e-01 98.4% 82.1%
4046363 2484.1.1.4 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_H 0.51 43.0 3.35e-01 100.0% 83.0%
4612839 2484.1.1.4 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_H 0.51 43.0 3.36e-01 100.0% 85.2%
4460237 330.4.1.1 a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.51 36.0 3.53e-01 87.5% 66.7%
5045702 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.51 43.0 2.86e-01 93.8% 30.8%
3962288 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.51 34.0 2.89e-01 73.4% 88.5%
4930177 11.1.1.1443 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF29994 0.51 42.0 3.39e-01 92.2% 68.0%
D2 high residues 83-155
PDB