←Back to structures

IMGVR_UViG_3300010353_002273-3300010353-Ga0116236_100250816

Arc-Vir

IMGVR_UViG_3300010353_002273-3300010353-Ga0116236_100250816

Identity

Kingdom:
archaea

Quality

85.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 12-64
PDB
Domain cluster: representative
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6lo8F01 1.10.287.810 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Mitochondrial import inner membrane translocase subunit tim13 like domains 0.65 46.0 4.28e-01 81.1% 59.4%
2ddhA01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.63 51.0 4.00e-01 92.5% 62.7%
2e62A01 6.10.140.420 Special › Helix non-globular › Helix Hairpins › 0.61 46.0 4.68e-01 83.0% 92.3%
4bzaA01 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.60 50.0 4.70e-01 96.2% 85.3%
3umbA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.58 50.0 4.40e-01 98.1% 78.5%
6f7hA00 1.20.1080.10 Mainly Alpha › Up-down Bundle › Glycerol uptake facilitator protein › Glycerol uptake facilitator protein. 0.57 46.0 3.03e-01 94.3% 55.4%
4xotA01 6.10.20.90 Special › Helix non-globular › Arc Repressor Mutant, subunit A › Hk620 tailspike protein, N-terminal domain-like 0.56 43.0 3.83e-01 84.9% 57.7%
2n98A00 1.10.1200.10 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like 0.56 45.0 3.87e-01 94.3% 67.8%
4mwaA00 3.20.20.20 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Dihydropteroate synthase-like 0.52 42.0 2.67e-01 88.7% 98.1%
2be4A02 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.51 40.0 3.43e-01 96.2% 53.5%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3994858 144.1.1.1 ↗ alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 0.56 43.0 3.76e-01 84.9% 58.7%
4939437 2003.1.1.9 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › AdoHcyase_NAD 0.55 41.0 2.76e-01 83.0% 19.7%
3934728 170.2.1.0 ↗ alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein N-terminal domain › Retrovirus capsid protein N-terminal domain 0.54 46.0 4.07e-01 98.1% 90.0%
3800487 148.1.3.19 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_3 0.52 37.0 2.95e-01 81.1% 62.4%
D2 high residues 76-122
PDB
Domain cluster: representative
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4yfbC02 2.30.120.10 Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region 0.69 50.0 4.29e-01 78.7% 83.3%
2rprA00 2.20.25.240 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.64 47.0 3.86e-01 80.9% 56.3%
2k31A00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.58 40.0 2.89e-01 72.3% 49.7%
2h92A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.57 38.0 2.54e-01 70.2% 25.0%
3uxuA00 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.56 39.0 2.83e-01 76.6% 65.4%
4nhxA02 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.54 40.0 2.68e-01 89.4% 72.3%
6i3gA02 3.90.76.10 Alpha Beta › Alpha-Beta Complex › Dipeptide-binding Protein; domain 1 › Dipeptide-binding Protein; Domain 1 0.54 36.0 2.84e-01 70.2% 40.7%
1nt2B01 3.30.2150.10 Alpha Beta › 2-Layer Sandwich › S-adenosyl-L-methionine-dependent methyltransferases › Fibrillarin homologue 0.53 35.0 3.09e-01 70.2% 43.7%
1wzoA01 2.30.30.370 Mainly Beta › Roll › SH3 type barrels. › FAH 0.52 36.0 3.75e-01 72.3% 92.5%
3nyqA02 3.30.300.30 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain 0.51 36.0 3.12e-01 78.7% 89.5%
2bf6A02 2.40.220.10 Mainly Beta › Beta Barrel › Intramolecular trans-sialidase; domain 3 › Intramolecular Trans-sialidase; Domain 3 0.50 39.0 3.64e-01 93.6% 72.7%
ECOD (9)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3164334 7516.1.1.60 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glyco_transf_25 0.56 43.0 2.79e-01 85.1% 71.3%
4067146 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.55 43.0 4.41e-01 100.0% 91.1%
3289528 327.5.1.2 ↗ a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins › AMP-binding_C 0.55 40.0 3.26e-01 80.9% 67.0%
5016164 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.54 39.0 2.84e-01 78.7% 86.2%
3350469 604.1.1.164 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › TMEM62_C 0.54 37.0 2.47e-01 76.6% 18.7%
3395659 327.5.1.2 ↗ a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins › AMP-binding_C 0.54 44.0 3.45e-01 100.0% 81.7%
4010839 65.1.1.3 ↗ beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Amidohydro_1 0.52 37.0 2.59e-01 76.6% 66.1%
166755 5.1.3.143 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BNR, BNR_3 0.50 39.0 2.33e-01 93.6% 10.7%
4947657 304.136.1.0 ↗ a+b two layers › Alpha-beta plaits › Oligo-peptide binding protein (OPPA) insertion domain › Oligo-peptide binding protein (OPPA) insertion domain 0.50 35.0 2.91e-01 72.3% 59.6%