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IMGVR_UViG_3300010365_002129-3300010365-Ga0116251_100097485

Arc-Vir

IMGVR_UViG_3300010365_002129-3300010365-Ga0116251_100097485

Quality

91.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-50
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01981.22 best PTH2 30.5 5.20e-07 100.0% 41.7%
CATH (43)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1q7sA00 3.40.1490.10 Alpha Beta › 3-Layer(aba) Sandwich › Bit1 › Bit1 0.82 74.0 5.47e-01 100.0% 41.9%
2gaxA00 3.40.1490.10 Alpha Beta › 3-Layer(aba) Sandwich › Bit1 › Bit1 0.68 60.0 4.38e-01 100.0% 46.3%
3vtiA01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.66 49.0 4.03e-01 100.0% 42.7%
2xzmJ00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.65 55.0 4.43e-01 100.0% 66.7%
3g2eB00 3.40.920.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 0.64 55.0 3.70e-01 96.0% 70.3%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.63 45.0 3.16e-01 78.0% 37.7%
2zogA01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.63 53.0 3.33e-01 100.0% 49.3%
3mgjA00 3.30.70.2690 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › LOR/SDH bifunctional enzyme, conserved domain 0.63 52.0 4.36e-01 100.0% 61.5%
1tkjA00 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.63 54.0 3.37e-01 100.0% 82.3%
3m05B01 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 53.0 4.40e-01 100.0% 53.3%
5ib9A01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.62 52.0 3.33e-01 100.0% 77.9%
5xyiU00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.61 52.0 4.29e-01 100.0% 68.0%
6vh5C03 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.61 50.0 4.30e-01 100.0% 64.0%
2raaA00 3.40.920.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 0.60 53.0 3.63e-01 100.0% 85.4%
5c4iE01 3.40.920.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 0.60 51.0 3.39e-01 98.0% 71.9%
3luyA03 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.60 49.0 4.23e-01 100.0% 65.2%
1gqeA02 3.30.70.1660 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 47.0 3.48e-01 100.0% 31.7%
2qyxA02 3.30.70.1360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › mj0159-like 0.59 50.0 3.98e-01 100.0% 74.3%
1l9aA00 3.30.56.30 Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › Signal recognition particle, SRP19-like subunit 0.58 49.0 4.15e-01 98.0% 57.5%
6n2nA01 3.40.920.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 0.58 51.0 3.48e-01 100.0% 89.3%
3n5mB01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.57 46.0 3.32e-01 100.0% 29.0%
2joqA01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.57 46.0 4.22e-01 100.0% 73.3%
7qprA02 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.57 44.0 3.47e-01 98.0% 45.9%
1o69A02 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.56 44.0 3.45e-01 100.0% 70.2%
1kvnA00 3.30.56.30 Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › Signal recognition particle, SRP19-like subunit 0.56 46.0 3.78e-01 100.0% 51.9%
1dt4A00 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.56 47.0 4.25e-01 100.0% 74.0%
2knrA00 3.40.1530.20 Alpha Beta › 3-Layer(aba) Sandwich › hypothetical protein tt1805 › Protein of unknown function (DUF1491) 0.56 46.0 3.63e-01 100.0% 87.3%
4ywzB00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.56 41.0 2.99e-01 82.0% 58.9%
5ccbA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.55 40.0 2.75e-01 82.0% 35.7%
7o4xA01 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 44.0 3.73e-01 100.0% 56.6%
3cedA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.55 45.0 3.79e-01 100.0% 60.2%
5xzqF00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 43.0 3.65e-01 100.0% 60.2%
3ktwB00 3.30.56.30 Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › Signal recognition particle, SRP19-like subunit 0.55 45.0 3.82e-01 100.0% 53.8%
4ozjA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 43.0 3.61e-01 100.0% 51.9%
3cueB00 3.30.1380.20 Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › Trafficking protein particle complex subunit 3 0.53 43.0 3.16e-01 100.0% 61.7%
3qv2A01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.53 38.0 2.65e-01 80.0% 23.5%
1dq3A03 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.53 40.0 3.52e-01 90.0% 50.6%
2qswA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.53 43.0 3.72e-01 100.0% 64.4%
2ob0C01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.53 41.0 3.01e-01 94.0% 72.8%
6fdfA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 36.0 2.54e-01 80.0% 27.7%
1qu6A02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.51 37.0 3.35e-01 82.0% 92.1%
2vf9A00 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.51 36.0 2.79e-01 80.0% 38.9%
3gb0A01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.50 40.0 2.64e-01 98.0% 86.2%
ECOD (53)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4559979 2501.1.1.1 a/b three-layered sandwiches › Peptidyl-tRNA hydrolase II › Peptidyl-tRNA hydrolase II › Peptidyl-tRNA hydrolase II › PTH2 0.91 82.0 6.06e-01 100.0% 40.8%
3741182 2501.1.1.1 a/b three-layered sandwiches › Peptidyl-tRNA hydrolase II › Peptidyl-tRNA hydrolase II › Peptidyl-tRNA hydrolase II › PTH2 0.91 82.0 5.78e-01 100.0% 35.0%
4946237 2501.1.1.1 a/b three-layered sandwiches › Peptidyl-tRNA hydrolase II › Peptidyl-tRNA hydrolase II › Peptidyl-tRNA hydrolase II › PTH2 0.89 79.0 5.94e-01 100.0% 42.6%
4025295 2501.1.1.1 a/b three-layered sandwiches › Peptidyl-tRNA hydrolase II › Peptidyl-tRNA hydrolase II › Peptidyl-tRNA hydrolase II › PTH2 0.89 78.0 5.70e-01 100.0% 38.0%
3280180 2501.1.1.0 a/b three-layered sandwiches › Peptidyl-tRNA hydrolase II › Peptidyl-tRNA hydrolase II › Peptidyl-tRNA hydrolase II 0.85 65.0 5.40e-01 100.0% 48.2%
3586210 2501.1.1.0 a/b three-layered sandwiches › Peptidyl-tRNA hydrolase II › Peptidyl-tRNA hydrolase II › Peptidyl-tRNA hydrolase II 0.84 66.0 5.50e-01 100.0% 50.6%
3401247 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.67 58.0 4.79e-01 100.0% 62.4%
3597309 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.65 56.0 4.31e-01 100.0% 48.3%
3216224 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.65 54.0 4.54e-01 100.0% 61.1%
5075281 2011.1.1.8 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M28 0.64 54.0 3.35e-01 100.0% 79.7%
5049218 101.1.9.2 alpha arrays › HTH › HTH › Putative DNA-binding domain › SRP19 0.64 55.0 4.39e-01 98.0% 51.0%
3590219 304.5.1.7 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 0.63 53.0 4.49e-01 100.0% 55.6%
3590710 304.8.1.2 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.62 51.0 4.32e-01 100.0% 61.1%
4963370 304.134.1.1 a+b two layers › Alpha-beta plaits › MJ1480-like › MJ1480-like › Saccharop_dh_N 0.62 52.0 4.59e-01 100.0% 73.8%
5082623 101.1.9.2 alpha arrays › HTH › HTH › Putative DNA-binding domain › SRP19 0.61 53.0 4.22e-01 98.0% 50.0%
3507278 101.1.2.98 alpha arrays › HTH › HTH › winged helix domain › CDT1 0.61 47.0 3.15e-01 90.0% 34.7%
4985834 2004.1.3.1 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III › POR 0.61 51.0 3.39e-01 96.0% 73.6%
3234452 327.11.2.1 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 0.61 50.0 4.29e-01 100.0% 71.1%
4373827 304.5.1.7 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 0.60 49.0 4.27e-01 100.0% 56.8%
4993856 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.60 48.0 4.00e-01 100.0% 60.0%
4093977 101.1.9.2 alpha arrays › HTH › HTH › Putative DNA-binding domain › SRP19 0.60 52.0 4.27e-01 100.0% 52.6%
3412676 312.1.1.19 a+b three layers › HIT-like › HIT-related › HIT-related › PF26216 0.60 50.0 3.67e-01 100.0% 74.7%
5005690 2004.1.3.1 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III › POR 0.60 50.0 3.50e-01 96.0% 70.6%
4033568 325.1.1.13 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › CO dehydrogenase molybdoprotein N-domain-like › PF29932 0.60 49.0 4.52e-01 100.0% 78.6%
4934366 2004.1.3.1 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III › POR 0.59 51.0 3.43e-01 98.0% 68.6%
3191194 312.1.1.9 a+b three layers › HIT-like › HIT-related › HIT-related › DUF3605 0.59 47.0 3.31e-01 100.0% 42.5%
4201034 101.1.2.41 alpha arrays › HTH › HTH › winged helix domain › FokI_dom_2 0.58 44.0 3.27e-01 88.0% 70.0%
5066190 304.5.1.0 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like 0.58 47.0 4.59e-01 100.0% 93.1%
5052007 1075.1.1.0 alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain 0.58 44.0 2.76e-01 86.0% 23.1%
4949289 101.1.9.2 alpha arrays › HTH › HTH › Putative DNA-binding domain › SRP19 0.58 49.0 4.21e-01 100.0% 58.8%
3230236 304.24.1.0 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.57 48.0 3.95e-01 100.0% 68.0%
3173026 242.1.1.1 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 0.57 47.0 3.34e-01 100.0% 32.6%
3675121 304.4.1.14 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › Dabb 0.57 48.0 4.32e-01 100.0% 93.3%
3823835 304.4.1.78 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › DUF7036 0.57 46.0 3.82e-01 100.0% 70.5%
4803119 304.5.1.3 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › CutA1 0.57 47.0 3.86e-01 100.0% 56.7%
3587109 304.5.1.7 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 0.57 46.0 3.99e-01 100.0% 55.6%
4949777 2004.1.3.1 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III › POR 0.56 48.0 3.27e-01 100.0% 88.7%
4117256 101.1.2.88 alpha arrays › HTH › HTH › winged helix domain › Dimerisation 0.56 43.0 3.31e-01 90.0% 51.5%
3215999 5001.1.1.111 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1, 7TM_GPCR_Srw 0.56 45.0 2.76e-01 96.0% 85.8%
3802643 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.55 43.0 3.69e-01 96.0% 73.7%
3343334 101.1.2.98 alpha arrays › HTH › HTH › winged helix domain › CDT1 0.55 42.0 3.21e-01 94.0% 57.9%
5270 304.8.1.5 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NIL 0.55 45.0 3.83e-01 100.0% 62.1%
3182316 304.3.1.20 a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › KH_SLS1_2 0.55 44.0 3.74e-01 100.0% 72.6%
5053534 2004.1.1.87 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.54 41.0 2.48e-01 88.0% 13.9%
3649691 2004.1.1.299 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF1995 0.53 43.0 2.85e-01 100.0% 82.0%
3170708 632.1.1.6 alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain › Pho88 0.52 40.0 3.05e-01 92.0% 71.0%
3304622 2006.1.1.4 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › NIF 0.52 40.0 2.78e-01 98.0% 62.6%
5036487 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.52 39.0 3.99e-01 98.0% 94.0%
3334401 101.1.2.566 alpha arrays › HTH › HTH › winged helix domain › CDT1, CDT1_C 0.52 38.0 2.57e-01 92.0% 30.1%
3915050 2004.1.1.87 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.51 39.0 2.50e-01 96.0% 28.8%
4237962 2004.1.1.198 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.51 39.0 2.39e-01 96.0% 21.8%
3291380 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.51 41.0 2.98e-01 98.0% 70.9%
3872357 2004.1.1.87 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.51 39.0 2.22e-01 96.0% 12.5%