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IMGVR_UViG_3300010413_000100-3300010413-Ga0136851_1000096712

Arc-Vir

IMGVR_UViG_3300010413_000100-3300010413-Ga0136851_1000096712

Identity

Kingdom:
archaea

Quality

77.5 mean pLDDT

Cluster

View cluster (247 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-109
PDB
Domain cluster: rep: NC_073317.1__YP_010749072.1__QCF72_gp16__00016__D4-119
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3gs9A01 6.20.110.10 Special › Other non-globular › Thrombin, subunit H › 0.71 50.0 5.75e-01 94.4% 100.0%
6toaE01 2.40.10.270 Mainly Beta › Beta Barrel › Thrombin, subunit H › Bacteriophage SPP1 head-tail adaptor protein 0.71 60.0 6.33e-01 92.6% 100.0%
2kz4A00 2.40.10.270 Mainly Beta › Beta Barrel › Thrombin, subunit H › Bacteriophage SPP1 head-tail adaptor protein 0.70 64.0 6.39e-01 100.0% 93.8%
2kcaA00 2.40.10.270 Mainly Beta › Beta Barrel › Thrombin, subunit H › Bacteriophage SPP1 head-tail adaptor protein 0.68 58.0 5.84e-01 98.1% 91.7%
3f3bA00 2.40.10.370 Mainly Beta › Beta Barrel › Thrombin, subunit H › Protein of unknown function DUF3599 0.64 59.0 5.85e-01 100.0% 96.5%
1k0hA00 2.40.10.180 Mainly Beta › Beta Barrel › Thrombin, subunit H › Phage tail proteins 0.63 48.0 4.70e-01 98.1% 73.5%
3nziA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.62 45.0 4.54e-01 98.1% 77.4%
2l1tA00 2.30.110.70 Mainly Beta › Roll › Pnp Oxidase; Chain A › 0.62 44.0 4.43e-01 97.2% 73.4%
1lvbA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.60 41.0 4.15e-01 97.2% 71.3%
1d1nA00 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.56 39.0 4.05e-01 76.9% 78.8%
1ci0B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 48.0 3.91e-01 98.1% 68.6%
1wzlA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 36.0 3.46e-01 99.1% 59.5%
2iabA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 47.0 4.31e-01 97.2% 75.5%
5oj2B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 33.0 3.53e-01 99.1% 70.8%
2hgsA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.51 40.0 4.00e-01 96.3% 80.2%
ECOD (26)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5038876 1.1.13.2 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_attach 0.76 61.0 6.60e-01 96.3% 100.0%
4032883 1.1.13.3 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_H_T_join 0.76 68.0 6.95e-01 99.1% 99.0%
5078808 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.73 57.0 6.26e-01 100.0% 98.9%
2642578 1.1.13.3 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_H_T_join 0.72 65.0 6.48e-01 100.0% 95.5%
185291 1.1.13.20 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Prophage_tailD1 0.71 51.0 5.83e-01 95.4% 100.0%
4034130 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.71 60.0 6.29e-01 100.0% 98.0%
3943285 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.71 64.0 6.46e-01 97.2% 98.2%
119252 1.1.13.3 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_H_T_join 0.70 64.0 6.39e-01 100.0% 93.8%
3590201 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.70 63.0 6.39e-01 100.0% 98.1%
4032900 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.69 61.0 6.24e-01 97.2% 99.0%
119197 1.1.13.3 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_H_T_join 0.68 58.0 5.84e-01 98.1% 91.7%
3587815 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.66 58.0 5.88e-01 99.1% 96.2%
4879695 1.1.13.29 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › E217_gp28 0.66 59.0 5.54e-01 100.0% 81.1%
3580020 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.65 56.0 4.66e-01 96.3% 81.0%
203 1.1.13.2 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_attach 0.63 48.0 4.70e-01 98.1% 73.5%
4888726 1.1.13.6 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tail_2 0.60 53.0 4.64e-01 98.1% 82.3%
4260208 1.1.13.62 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › PF27197 0.58 51.0 5.18e-01 92.6% 100.0%
3597372 1.1.17.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.57 49.0 3.68e-01 96.3% 94.7%
4514734 1.1.13.42 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Tail_tube 0.57 50.0 5.01e-01 97.2% 98.2%
4154363 1.1.12.1 ↗ beta barrels › cradle loop barrel › RIFT-related › barrel domain in QueA-like proteins › Queuosine_synth 0.57 40.0 3.82e-01 98.1% 61.5%
3058416 1.1.5.39 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › TssD 0.56 50.0 4.77e-01 98.1% 87.4%
3269940 1.1.17.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.54 45.0 3.38e-01 92.6% 87.5%
3843200 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.52 45.0 3.45e-01 95.4% 86.5%
3514532 304.9.1.42 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRP7 0.52 41.0 3.36e-01 97.2% 44.4%
3701817 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.51 44.0 3.30e-01 95.4% 94.4%
3553055 10.32.1.196 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › WLS_GOLD 0.50 36.0 3.10e-01 76.9% 95.7%